RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 PYROXD2Q8N2H3 581 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 PCDH19Q8TAB3 1148 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 HMCESQ96FZ2 354 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 TUBGCP5Q96RT8 1024 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 PCDHB18PQ96TA0 734 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 NCAPGQ9BPX3 1015 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 KLC2Q9H0B6 622 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 VPS16Q9H269 839 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 SUV39H2Q9H5I1 410 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 UBA2Q9UBT2 640 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-221ENST00000550914 FZD10Q9ULW2 581 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 SIK3Q9Y2K2 1263 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 DGKBQ9Y6T7 804 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 HECTD1Q9ULT8 2610 aa12.97□□□□□ -0.33
PTCH1-221ENST00000550914 UBR5O95071 2799 aaPredicted RBP12.97□□□□□ -0.33
PTCH1-221ENST00000550914 TCRBV5S1A1TA0A578 114 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CFAP69A5D8W1 941 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 EIF3CLB5ME19 914 aaKnown RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 D6RAR5 112 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 PLD2O14939 933 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 EPHB6O15197 1021 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CCP110O43303 1012 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 ZIC2O95409 532 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CELA2BP08218 269 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 DESP17661 470 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 ITIH2P19823 946 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 MMP12P39900 470 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CSNK1DP48730 415 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 KLK7P49862 253 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 NDST2P52849 883 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 SRP54P61011 504 aaKnown RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CLN3Q13286 438 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 MTM1Q13496 603 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 INPP5AQ14642 412 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CYTH1Q15438 398 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CCDC81Q6ZN84 652 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 MON1BQ7L1V2 547 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 HID1Q8IV36 788 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 KYQ8NBH2 561 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 MED8Q96G25 268 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 GFM1Q96RP9 751 aaKnown RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CCNL2Q96S94 520 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 EIF3CQ99613 913 aaKnown RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CNPY3Q9BT09 278 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 APOOQ9BUR5 198 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 STRADBQ9C0K7 418 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 PDFQ9HBH1 243 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 PCDH12Q9NPG4 1184 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 NLRC4Q9NPP4 1024 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 CHMP5Q9NZZ3 219 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 GULP1Q9UBP9 304 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 ATXN7L1Q9ULK2 861 aaPredicted RBP12.96□□□□□ -0.33
PTCH1-221ENST00000550914 GPR34Q9UPC5 381 aa12.96□□□□□ -0.33
PTCH1-221ENST00000550914 PTPN13Q12923 2485 aa12.96□□□□□ -0.34
PTCH1-221ENST00000550914 FLNCQ14315 2725 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 PMS2P1A4D2B8 440 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 B8ZZF3 427 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 INSIG1O15503 277 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 CREB3O43889 395 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 PRAMEF11O60813 436 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 PIGNO95427 931 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 HOXC4P09017 264 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-221ENST00000550914 PNLIPP16233 465 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 CCKBRP32239 447 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 LIG3P49916 1009 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 SYCP1Q15431 976 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 PPP1R15BQ5SWA1 713 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 CFAP58Q5T655 872 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 DNAJC24Q6P3W2 148 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 SCYL2Q6P3W7 929 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 FOXR1Q6PIV2 292 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 ENPP7Q6UWV6 458 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 RAB11FIP2Q7L804 512 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 FBXO39Q8N4B4 442 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 GPR156Q8NFN8 814 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 TSACCQ96A04 125 aaPredicted RBP12.95□□□□□ -0.34
PTCH1-221ENST00000550914 CCDC74AQ96AQ1 378 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 TMEM159Q96B96 161 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 WDR92Q96MX6 357 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 TMEM74Q96NL1 305 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 RBM15Q96T37 977 aaKnown RBP eCLIP12.95□□□□□ -0.34
PTCH1-221ENST00000550914 SEMA4CQ9C0C4 833 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 LRRC19Q9H756 370 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 ATP13A3Q9H7F0 1226 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.95□□□□□ -0.34
PTCH1-221ENST00000550914 KLQ9UEF7 1012 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 APPL1Q9UKG1 709 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 ATP8A1Q9Y2Q0 1164 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 COQ6Q9Y2Z9 468 aa12.95□□□□□ -0.34
PTCH1-221ENST00000550914 TNFRSF10CO14798 259 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 NVLO15381 856 aaKnown RBP12.94□□□□□ -0.34
PTCH1-221ENST00000550914 TNFP01375 233 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 RPLP0P05388 317 aaKnown RBP12.94□□□□□ -0.34
PTCH1-221ENST00000550914 UGT1A5P35504 534 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 INHBCP55103 352 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 KIAA1024LP59773 190 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 RPL7AP62424 266 aaKnown RBP12.94□□□□□ -0.34
PTCH1-221ENST00000550914 CCL7P80098 99 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 LY6DQ14210 128 aa12.94□□□□□ -0.34
PTCH1-221ENST00000550914 PPP1R2P3Q6NXS1 205 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms