RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 C6P13671 934 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 CTSEP14091 401 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 SERPINB6P35237 376 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 IGFALSP35858 605 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 MMP12P39900 470 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 EIF2S3P41091 472 aaKnown RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 ABCG1P45844 678 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 LIG3P49916 1009 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 UBASH3AP57075 661 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZBED6P86452 979 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 MTM1Q13496 603 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 DPYSQ14117 519 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 LBRQ14739 615 aaKnown RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 CA9Q16790 459 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 TDRD12Q587J7 1177 aaKnown RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 PRRT3Q5FWE3 981 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 TMCO3Q6UWJ1 677 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 KDM7AQ6ZMT4 941 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 TSEN2Q8NCE0 465 aaKnown RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 OR6C4Q8NGE1 309 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 IFI44Q8TCB0 444 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 TEKT4Q8WW24 435 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 ECHDC3Q96DC8 303 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 EXOC2Q96KP1 924 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 ZNF578Q96N58 590 aaPredicted RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 PEBP4Q96S96 227 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 FUCA2Q9BTY2 467 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 APOOQ9BUR5 198 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 BOCQ9BWV1 1114 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 HAUS2Q9NVX0 235 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 CWC15Q9P013 229 aaKnown RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 MYO1AQ9UBC5 1043 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 KLF15Q9UIH9 416 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 CAPN11Q9UMQ6 739 aa10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 LUC7L2Q9Y383 392 aaKnown RBP10.96□□□□□ -0.65
VTI1BP3-201ENST00000550220 LY6G6EA0A0G2JKS1 128 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 CPED1A4D0V7 1026 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 TMX2-CTNND1H3BSU7 103 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 MYO1FO00160 1098 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 CACNB4O00305 520 aaPredicted RBP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 ZZEF1O43149 2961 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 SOCS5O75159 536 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 RASGRP1O95267 797 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 TNFP01375 233 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 HOXC4P09017 264 aaPredicted RBP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 LSSP48449 732 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 SCNN1BP51168 640 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 HK3P52790 923 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 ADKP55263 362 aaKnown RBP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 CDH6P55285 790 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 FANCCQ00597 558 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 ZNF235Q14590 738 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 INPP5AQ14642 412 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 NFATC4Q14934 902 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 IRF4Q15306 451 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 CDKN3Q16667 212 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 HADHQ16836 314 aaKnown RBP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 WSCD2Q2TBF2 565 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 DEFB133Q30KQ1 61 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 TBC1D25Q3MII6 688 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 LRRC73Q5JTD7 316 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 C6orf132Q5T0Z8 1188 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 EFL1Q7Z2Z2 1120 aaKnown RBP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 POLNQ7Z5Q5 900 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 GKN2Q86XP6 184 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 ARHGAP12Q8IWW6 846 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 NDUFAF2Q8N183 169 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 NIPA2Q8N8Q9 360 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 POLR1BQ9H9Y6 1135 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 MBNL1Q9NR56 388 aaKnown RBP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 RCOR3Q9P2K3 495 aaPredicted RBP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 U3KQA8 63 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 PTPRBP23467 1997 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 SPEGQ15772 3267 aa10.95□□□□□ -0.66
VTI1BP3-201ENST00000550220 FREM2Q5SZK8 3169 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 CHD5Q8TDI0 1954 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 NYNRINQ9P2P1 1898 aaKnown RBP10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 SYCE3A1L190 88 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 TNFRSF10CO14798 259 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 YY2O15391 372 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 BRINP1O60477 761 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 USP12O75317 370 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 CSO75390 466 aaKnown RBP10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 GCATO75600 419 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 DXOO77932 396 aaKnown RBP10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 ELFN1P0C7U0 828 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 RARAP10276 462 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 TSHRP16473 764 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 ITIH2P19823 946 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 CES1P23141 567 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 MLLT3P42568 568 aaPredicted RBP10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 CLDN6P56747 220 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 ERVPABLB-1P60509 514 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 SRP54P61011 504 aaKnown RBP10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 NFKBIBQ15653 356 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 ISXQ2M1V0 245 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 TSR1Q2NL82 804 aaKnown RBP10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 TPRG1LQ5T0D9 272 aa10.94□□□□□ -0.66
VTI1BP3-201ENST00000550220 E4F1Q66K89 784 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms