RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NCF1P14598 390 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 KPNA2P52292 529 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 SLC5A3P53794 718 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NR1H2P55055 460 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 MTTPP55157 894 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TAP1Q03518 808 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 STX5Q13190 355 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 GRM1Q13255 1194 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 GTF2H3Q13889 308 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 CSHL1Q14406 222 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 LPIN1Q14693 890 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 EMC2Q15006 297 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TBCCQ15814 346 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NADK2Q4G0N4 442 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 PTPN20Q4JDL3 420 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 FNDC3BQ53EP0 1204 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 GADL1Q6ZQY3 521 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ACOT1Q86TX2 421 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 DAW1Q8N136 415 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 SLC7A6OSQ96CW6 309 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 YIPF4Q9BSR8 244 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 MRPL4Q9BYD3 311 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NOL11Q9H8H0 719 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 C17orf75Q9HAS0 396 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 FLRT1Q9NZU1 646 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 RSL24D1Q9UHA3 163 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 URB1O60287 2271 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 BOLA2-SMG1P6H3BVE0 249 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 RNASEH1O60930 286 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TIPRLO75663 272 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ATP6V1B2P21281 511 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ARPP19P56211 112 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 SLBPQ14493 270 aaKnown RBP eCLIP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 FAM47CQ5HY64 1035 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TXNRD3NBQ6F5E7 133 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF554Q86TJ5 538 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 STK32CQ86UX6 486 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 ZNF677Q86XU0 584 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 KATNAL2Q8IYT4 538 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 DRAXINQ8NBI3 349 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 PCYOX1LQ8NBM8 494 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 NSUN6Q8TEA1 469 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 C8orf48Q96LL4 319 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 MBOAT7Q96N66 472 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 LENG8Q96PV6 779 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 RIT2Q99578 217 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TMEM109Q9BVC6 243 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 GCOM2Q9BZD3 368 aaPredicted RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 CAB39LQ9H9S4 337 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 MRPL40Q9NQ50 206 aaKnown RBP5.53□□□□□ -1.52
LIMA1-203ENST00000547825 HACD3Q9P035 362 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 SLC17A6Q9P2U8 582 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 DCDC2Q9UHG0 476 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 AP4E1Q9UPM8 1137 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 SH3GLB1Q9Y371 365 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 DGKBQ9Y6T7 804 aa5.53□□□□□ -1.52
LIMA1-203ENST00000547825 TRIM43BA6NCK2 446 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 STX16-NPEPL1H3BU86 382 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 J3QRK9 145 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 ABLIM1O14639 778 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 SNX2O60749 519 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 TRIM13O60858 407 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 AMHP03971 560 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 HNRNPLP14866 589 aaKnown RBP eCLIP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 GRK2P25098 689 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 PSMA4P25789 261 aaKnown RBP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 PSMB9P28065 219 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 SFNP31947 248 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 ACVR2BQ13705 512 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 POU6F1Q14863 301 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 TAF12Q16514 161 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 ZNF792Q3KQV3 632 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 SFT2D3Q587I9 215 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 PITRM1Q5JRX3 1037 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 CES4AQ5XG92 561 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 CCSAPQ6IQ19 270 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 RHBDF2Q6PJF5 856 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 KCNT2Q6UVM3 1135 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 DMRTC2Q8IXT2 367 aaPredicted RBP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 COLGALT1Q8NBJ5 622 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 BPIFB6Q8NFQ5 453 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 OR5B17Q8NGF7 314 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 DDX1Q92499 740 aaKnown RBP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 ITFG2Q969R8 447 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 FBXL8Q96CD0 374 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 MIPEPQ99797 713 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 SH3GL1Q99961 368 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 WDR83Q9BRX9 315 aaKnown RBP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 THUMPD3Q9BV44 507 aaKnown RBP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 MKRN2Q9H000 416 aaKnown RBP5.52□□□□□ -1.53
LIMA1-203ENST00000547825 KCND2Q9NZV8 630 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 POMPQ9Y244 141 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 SCN5AQ14524 2016 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 TCRBV7S3A2A0A539 114 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 HEATR9A2RTY3 570 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 TOR1BO14657 336 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 DLX3O60479 287 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 JCHAINP01591 159 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 CYP2C8P10632 490 aa5.52□□□□□ -1.53
LIMA1-203ENST00000547825 CCNB1P14635 433 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms