RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CASQ2O14958 399 aaPredicted RBP15.13■□□□□ 0.01
USP28-214ENST00000545540 PABPC4LP0CB38 370 aaKnown RBP15.13■□□□□ 0.01
USP28-214ENST00000545540 LHX1P48742 406 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 RAB41Q5JT25 222 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 LDLRAD1Q5T700 205 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 REP15Q6BDI9 236 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 DPF3Q92784 378 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 HBEGFQ99075 208 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 FAM124BQ9H5Z6 455 aaPredicted RBP15.13■□□□□ 0.01
USP28-214ENST00000545540 C6orf203Q9P0P8 240 aaPredicted RBP15.13■□□□□ 0.01
USP28-214ENST00000545540 NEU3Q9UQ49 428 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 AP4S1Q9Y587 144 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 ERI2A8K979 691 aaKnown RBP15.13■□□□□ 0.01
USP28-214ENST00000545540 PSMC3P17980 439 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 LRPAP1P30533 357 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 GALNT3Q14435 633 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 HERC6Q8IVU3 1022 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 DDIASQ8IXT1 998 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 HMCESQ96FZ2 354 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 SOX17Q9H6I2 414 aaPredicted RBP15.13■□□□□ 0.01
USP28-214ENST00000545540 PRDM16Q9HAZ2 1276 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 DMAP1Q9NPF5 467 aaPredicted RBP15.13■□□□□ 0.01
USP28-214ENST00000545540 CACNA2D2Q9NY47 1150 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 HS3ST4Q9Y661 456 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 ARL5AQ9Y689 179 aa15.13■□□□□ 0.01
USP28-214ENST00000545540 KIF3CO14782 793 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 HNRNPRO43390 633 aaKnown RBP15.12■□□□□ 0.01
USP28-214ENST00000545540 AKAP10O43572 662 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 F9P00740 461 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 GNAO1P09471 354 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 FUT11Q495W5 492 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 LINC00523Q86TU6 105 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 CNDP1Q96KN2 507 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 EXOC2Q96KP1 924 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 AP5M1Q9H0R1 490 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 ZNF385DQ9H6B1 395 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 PRPF19Q9UMS4 504 aaKnown RBP15.12■□□□□ 0.01
USP28-214ENST00000545540 TIMM22Q9Y584 194 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 E9PAM4 449 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 BCAS2O75934 225 aaPredicted RBP15.12■□□□□ 0.01
USP28-214ENST00000545540 CHRNA1P02708 482 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 PRDX6P30041 224 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 GRM2Q14416 872 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 PSMD5Q16401 504 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 PFKFB4Q16877 469 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 CPNE9Q8IYJ1 553 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 TMEM102Q8N9M5 508 aaPredicted RBP15.12■□□□□ 0.01
USP28-214ENST00000545540 CANT1Q8WVQ1 401 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 PTERQ96BW5 349 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 HIC2Q96JB3 615 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 PRICKLE1Q96MT3 831 aaPredicted RBP15.12■□□□□ 0.01
USP28-214ENST00000545540 MRPL57Q9BQC6 102 aaKnown RBP15.12■□□□□ 0.01
USP28-214ENST00000545540 FAM50BQ9Y247 325 aa15.12■□□□□ 0.01
USP28-214ENST00000545540 MRASO14807 208 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 MTSS1O43312 755 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 IPO13O94829 963 aaKnown RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 LINC00032P0C843 101 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 ATP5F1P24539 256 aaPredicted RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 GRB7Q14451 532 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 HECTD2Q5U5R9 776 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 GDF6Q6KF10 455 aaPredicted RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 CYHR1Q6ZMK1 362 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 SCD5Q86SK9 330 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 CFAP52Q8N1V2 620 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 SLCO4A1Q96BD0 722 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 TMEM79Q9BSE2 394 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 PRG3Q9Y2Y8 225 aaPredicted RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 TRAF6Q9Y4K3 522 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 GOLGA8CPA6NN73 597 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 UBXN8O00124 270 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 MATN3O15232 486 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 ANXA9O76027 345 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 ZNF865P0CJ78 1059 aaPredicted RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 RANBP1P43487 201 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 EFEMP1Q12805 493 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 FSCN1Q16658 493 aaKnown RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 UPP1Q16831 310 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 SLC39A12Q504Y0 691 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 RETREG3Q86VR2 466 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 SPPL2CQ8IUH8 684 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 OR13C4Q8NGS5 318 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 ETAA1Q9NY74 926 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 EPS15L1Q9UBC2 864 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 USP22Q9UPT9 525 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 ANKRD6Q9Y2G4 727 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 RNF11Q9Y3C5 154 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 IRAK2O43187 625 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 B4GALT3O60512 393 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 APOA4P06727 396 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 ALDOCP09972 364 aaKnown RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 CALRP27797 417 aaKnown RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 AXLP30530 894 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 MAPK10P53779 464 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 OVOS1Q6IE37 1185 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 RANBP10Q6VN20 620 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 NUP93Q8N1F7 819 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 C2CD4AQ8NCU7 369 aaPredicted RBP15.11■□□□□ 0.01
USP28-214ENST00000545540 OR13J1Q8NGT2 312 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 MYEOVQ96EZ4 313 aa15.11■□□□□ 0.01
USP28-214ENST00000545540 FCRL5Q96RD9 977 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms