RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 TPRG1LQ5T0D9 272 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 TMCO4Q5TGY1 634 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 LVRNQ6Q4G3 990 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 RBM44Q6ZP01 1051 aaKnown RBP13.23□□□□□ -0.29
RTN3-212ENST00000543123 SRLQ86TD4 932 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 RBFAQ8N0V3 343 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 ZNF248Q8NDW4 579 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 UBL7Q96S82 380 aaPredicted RBP13.23□□□□□ -0.29
RTN3-212ENST00000543123 LGMNQ99538 433 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 BOCQ9BWV1 1114 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 POLR1BQ9H9Y6 1135 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 MBNL1Q9NR56 388 aaKnown RBP13.23□□□□□ -0.29
RTN3-212ENST00000543123 TMEM63CQ9P1W3 806 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 PCDHB1Q9Y5F3 818 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 BAHCC1Q9P281 2608 aa13.23□□□□□ -0.29
RTN3-212ENST00000543123 BPTFQ12830 3046 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 A0A1B0GTH6 734 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 A0A1W2PQ67 120 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 H3BRJ5 948 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 DXOO77932 396 aaKnown RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 ELFN1P0C7U0 828 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 HOXB3P14651 431 aaPredicted RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 ERCC2P18074 760 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 KELP23276 732 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 MIPP30301 263 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 PCK1P35558 622 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 HSPA9P38646 679 aaKnown RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 ARL4AP40617 200 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 LIG3P49916 1009 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 HK3P52790 923 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 UCNP55089 124 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 ADKP55263 362 aaKnown RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 ERVPABLB-1P60509 514 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 IL10RBQ08334 325 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 NSUN2Q08J23 767 aaKnown RBP eCLIP13.22□□□□□ -0.29
RTN3-212ENST00000543123 MTM1Q13496 603 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 NFATC4Q14934 902 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 AGERQ15109 404 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 BROXQ5VW32 411 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 AFMIDQ63HM1 303 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 GUSBP11Q6P575 273 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 ZNF571Q7Z3V5 609 aaPredicted RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 GKN2Q86XP6 184 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 CAMK1DQ8IU85 385 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 BBS5Q8N3I7 341 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 ARL10Q8N8L6 244 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 NETO2Q8NC67 525 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 TSEN2Q8NCE0 465 aaKnown RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 ZNF599Q96NL3 588 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 KCTD15Q96SI1 283 aaPredicted RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 SLC39A8Q9C0K1 460 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 THSD1Q9NS62 852 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 KLQ9UEF7 1012 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 SEPT3Q9UH03 358 aa13.22□□□□□ -0.29
RTN3-212ENST00000543123 BZW2Q9Y6E2 419 aaKnown RBP13.22□□□□□ -0.29
RTN3-212ENST00000543123 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.21□□□□□ -0.29
RTN3-212ENST00000543123 MUSKO15146 869 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 LRCH4O75427 683 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 GCATO75600 419 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 MPOP05164 745 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 MYF5P13349 255 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 TSHRP16473 764 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 ITPKBP27987 946 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 RBMS1P29558 406 aaKnown RBP13.21□□□□□ -0.29
RTN3-212ENST00000543123 SERPINB6P35237 376 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 C1orf61Q13536 156 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 ZNF235Q14590 738 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 INPP5AQ14642 412 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 CA9Q16790 459 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 ISXQ2M1V0 245 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 WSCD2Q2TBF2 565 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 SOWAHCQ53LP3 525 aaPredicted RBP13.21□□□□□ -0.29
RTN3-212ENST00000543123 BOLA3Q53S33 107 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 TDRD12Q587J7 1177 aaKnown RBP13.21□□□□□ -0.29
RTN3-212ENST00000543123 FIGNQ5HY92 759 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 CAVIN1Q6NZI2 390 aaKnown RBP13.21□□□□□ -0.29
RTN3-212ENST00000543123 IGF2-ASQ6U949 168 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 HID1Q8IV36 788 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 SLC35F3Q8IY50 421 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 OR6C4Q8NGE1 309 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 NSMCE1Q8WV22 266 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 IQCDQ96DY2 449 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 WDR92Q96MX6 357 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 PSKH2Q96QS6 385 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 PEBP4Q96S96 227 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 APOOQ9BUR5 198 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 KCTD5Q9NXV2 234 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 PADI4Q9UM07 663 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 COQ6Q9Y2Z9 468 aa13.21□□□□□ -0.29
RTN3-212ENST00000543123 FASNP49327 2511 aaKnown RBP13.21□□□□□ -0.29
RTN3-212ENST00000543123 CACNB4O00305 520 aaPredicted RBP13.2□□□□□ -0.3
RTN3-212ENST00000543123 DDX3XO00571 662 aaKnown RBP eCLIP13.2□□□□□ -0.36e-22■■■□□ 17.7
RTN3-212ENST00000543123 YY2O15391 372 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 BUB1BO60566 1050 aaPredicted RBP13.2□□□□□ -0.3
RTN3-212ENST00000543123 SOCS5O75159 536 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 PCCBP05166 539 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 ITIH2P19823 946 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 TGM2P21980 687 aa13.2□□□□□ -0.3
RTN3-212ENST00000543123 MLLT3P42568 568 aaPredicted RBP13.2□□□□□ -0.3
RTN3-212ENST00000543123 SRP54P61011 504 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms