RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 MT-CO1P00395 513 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 ALPPP05187 535 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 CD19P15391 556 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 TIMP2P16035 220 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 XPAP23025 273 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 CCR1P32246 355 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 HOXD13P35453 343 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 CCNHP51946 323 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 RAD23BP54727 409 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 GEMIN4P57678 1058 aaKnown RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 RAD51Q06609 339 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 ELP6Q0PNE2 266 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 MTM1Q13496 603 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 DNASE1L3Q13609 305 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 STILQ15468 1287 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 UGT8Q16880 541 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 ZC3H12AQ5D1E8 599 aaKnown RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 LYPLAL1Q5VWZ2 237 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 MTFR2Q6P444 385 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 WDR74Q6RFH5 385 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 TTC7BQ86TV6 843 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 C17orf82Q86X59 251 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 CIR1Q86X95 450 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 PLPP6Q8IY26 295 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 RYBPQ8N488 228 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 CISD2Q8N5K1 135 aaKnown RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 CHDHQ8NE62 594 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 SPATA3Q8NHX4 192 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 UBE2Q2Q8WVN8 375 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 TM9SF4Q92544 642 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 ILKAPQ9H0C8 392 aaPredicted RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 STN1Q9H668 368 aaKnown RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 MBNL1Q9NR56 388 aaKnown RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 SUCOQ9UBS9 1254 aaKnown RBP9.53□□□□□ -0.88
YBX3-211ENST00000541351 USP25Q9UHP3 1055 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 VPS51Q9UID3 782 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 B3GNT3Q9Y2A9 372 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 OR51B4Q9Y5P0 310 aa9.53□□□□□ -0.88
YBX3-211ENST00000541351 CXorf51AA0A1B0GTR3 108 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 RASA4BC9J798 803 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 TULP2O00295 520 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 AREL1O15033 823 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 RASA4O43374 803 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 KRT86O43790 486 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 MMP20O60882 483 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 C8BP07358 591 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 FURINP09958 794 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 VDRP11473 427 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 F8A1P23610 371 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 RRADP55042 308 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 MAZP56270 477 aaKnown RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 KIAA1024LP59773 190 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 RPS15P62841 145 aaKnown RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 PPP2R2AP63151 447 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 DNM1Q05193 864 aaKnown RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 ADAM9Q13443 819 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 POLD3Q15054 466 aaPredicted RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 ACBD5Q5T8D3 534 aaPredicted RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 FBXL22Q6P050 247 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 SYVN1Q86TM6 617 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 SLC9A9Q8IVB4 645 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 CHTF18Q8WVB6 975 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 C19orf60Q96EN9 201 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 PDXPQ96GD0 296 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 CUEDC2Q9H467 287 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 APOBEC3GQ9HC16 384 aaKnown RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 GPR83Q9NYM4 423 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 HECAQ9UBI9 543 aaPredicted RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 XPO7Q9UIA9 1087 aaKnown RBP9.52□□□□□ -0.89
YBX3-211ENST00000541351 MOSPD1Q9UJG1 213 aa9.52□□□□□ -0.89
YBX3-211ENST00000541351 ARGFXA6NJG6 315 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 BHMG1C9JSJ3 638 aaPredicted RBP9.51□□□□□ -0.89
YBX3-211ENST00000541351 K7ERQ8 282 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 SMAD6O43541 496 aaKnown RBP9.51□□□□□ -0.89
YBX3-211ENST00000541351 SNAP91O60641 907 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 CEACAM4O75871 244 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 ENDOD1O94919 500 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 KRT13P13646 458 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 CCNB1P14635 433 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 MPSTP25325 297 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 ABL2P42684 1182 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 SERPINH1P50454 418 aaKnown RBP9.51□□□□□ -0.89
YBX3-211ENST00000541351 SNRPD1P62314 119 aaKnown RBP9.51□□□□□ -0.89
YBX3-211ENST00000541351 ENPEPQ07075 957 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 FOXM1Q08050 763 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 IL11RAQ14626 422 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 INPP5AQ14642 412 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 SNAP47Q5SQN1 464 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 NKAIN2Q5VXU1 208 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 ZNF783Q6ZMS7 281 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 BNC2Q6ZN30 1099 aaPredicted RBP9.51□□□□□ -0.89
YBX3-211ENST00000541351 INTS8Q75QN2 995 aaKnown RBP9.51□□□□□ -0.89
YBX3-211ENST00000541351 BRAPQ7Z569 592 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 ARHGAP22Q7Z5H3 698 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 TAC4Q86UU9 113 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 XYLT1Q86Y38 959 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 RASGRP3Q8IV61 690 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 PARP9Q8IXQ6 854 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 PLEKHO2Q8TD55 490 aa9.51□□□□□ -0.89
YBX3-211ENST00000541351 TMEM174Q8WUU8 243 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms