RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 CCNB1P14635 433 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 CES1P23141 567 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 EPHA8P29322 1005 aaPredicted RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 CTNNA1P35221 906 aaKnown RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 MARCKSL1P49006 195 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 ARRB1P49407 418 aaPredicted RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 MAXP61244 160 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 POLR2LP62875 67 aaKnown RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 IFI35P80217 286 aaPredicted RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 TRAF2Q12933 501 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 RALGDSQ12967 914 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 TFDP2Q14188 446 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 SUZ12Q15022 739 aaKnown RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 PPP2R5EQ16537 467 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 ODF2Q5BJF6 829 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 TFDP3Q5H9I0 405 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 SPOCD1Q6ZMY3 1216 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 DPPA4Q7L190 304 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 GLRX5Q86SX6 157 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 KIAA1328Q86T90 577 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 DCP2Q8IU60 420 aaKnown RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 CCDC13Q8IYE1 715 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 RCOR2Q8IZ40 523 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 OR13H1Q8NG92 308 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 EXD1Q8NHP7 514 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 RNF25Q96BH1 459 aaPredicted RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 IFT43Q96FT9 208 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 BMFQ96LC9 184 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 MYOCQ99972 504 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 MAK16Q9BXY0 300 aaKnown RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 POLR1EQ9GZS1 481 aaKnown RBP13.2□□□□□ -0.3
LTBR-208ENST00000541005 NT5MQ9NPB1 228 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 PCOLCE2Q9UKZ9 415 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.2□□□□□ -0.3
LTBR-208ENST00000541005 CEP295Q9C0D2 2601 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 CHD8Q9HCK8 2581 aa13.2□□□□□ -0.3
LTBR-208ENST00000541005 hCG_1818297A0A087WSY0 165 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 GRID2IPA4D2P6 1211 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 POM121BA6NF01 834 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 KCNK3O14649 394 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 TOR1BO14657 336 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 PPP1R12AO14974 1030 aaPredicted RBP13.19□□□□□ -0.3
LTBR-208ENST00000541005 MMP20O60882 483 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 ZRANB2O95218 330 aaKnown RBP eCLIP13.19□□□□□ -0.3
LTBR-208ENST00000541005 PGLSO95336 258 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 HLA-DQB2P05538 268 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 THEGLP0DJG4 465 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 C6P13671 934 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 TNNT1P13805 278 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 ITIH2P19823 946 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 TGM2P21980 687 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 CTNNA2P26232 953 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 IGFALSP35858 605 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 GRK6P43250 576 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 RABIFP47224 123 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 NR2C2P49116 596 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 CLDN2P57739 230 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 PFN3P60673 137 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 PDK1Q15118 436 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 INAVAQ3KP66 663 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 KANSL1Q7Z3B3 1105 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 RFX6Q8HWS3 928 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 SLC22A18ASQ8N1D0 253 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 TP53I13Q8NBR0 393 aaPredicted RBP13.19□□□□□ -0.3
LTBR-208ENST00000541005 SAP25Q8TEE9 199 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 KRT35Q92764 455 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 RBM41Q96IZ5 413 aaKnown RBP13.19□□□□□ -0.3
LTBR-208ENST00000541005 LGMNQ99538 433 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 IL12RB2Q99665 862 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 SEMA3CQ99985 751 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 WRAP53Q9BUR4 548 aaKnown RBP13.19□□□□□ -0.3
LTBR-208ENST00000541005 RBM22Q9NW64 420 aaKnown RBP eCLIP13.19□□□□□ -0.3
LTBR-208ENST00000541005 PCDHA3Q9Y5H8 950 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 HEY1Q9Y5J3 304 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 ASXL3Q9C0F0 2248 aa13.19□□□□□ -0.3
LTBR-208ENST00000541005 MYLKQ15746 1914 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 PLXNB3Q9ULL4 1909 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 TTC24A2A3L6 582 aaPredicted RBP13.18□□□□□ -0.3
LTBR-208ENST00000541005 CCDC66A2RUB6 948 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 FPGTO14772 594 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 FZD6O60353 706 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 CPP00450 1065 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 NFKBIAP25963 317 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 PMLP29590 882 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 PTPN7P35236 360 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 COPS2P61201 443 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 KIF5AQ12840 1032 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 IHHQ14623 411 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 PRKD1Q15139 912 aaPredicted RBP13.18□□□□□ -0.3
LTBR-208ENST00000541005 N4BP2L1Q5TBK1 243 aaPredicted RBP13.18□□□□□ -0.3
LTBR-208ENST00000541005 Q6ZSR6 202 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 BZW1Q7L1Q6 419 aaKnown RBP13.18□□□□□ -0.3
LTBR-208ENST00000541005 PTAR1Q7Z6K3 402 aaPredicted RBP13.18□□□□□ -0.3
LTBR-208ENST00000541005 CCNYQ8ND76 341 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 CCDC112Q8NEF3 446 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 ARRDC2Q8TBH0 407 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 KIAA1524Q8TCG1 905 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 CAMK1GQ96NX5 476 aa13.18□□□□□ -0.3
LTBR-208ENST00000541005 MCCC1Q96RQ3 725 aaPredicted RBP13.18□□□□□ -0.3
LTBR-208ENST00000541005 DESI2Q9BSY9 194 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms