RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CXCR3P49682 368 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 PDX1P52945 283 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 TAS2R38P59533 333 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 TGIF1Q15583 401 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 TBR1Q16650 682 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 POM121L1PQ3SYA9 428 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 RAB6CQ53S08 254 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 OTUD1Q5VV17 481 aaPredicted RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 POLNQ7Z5Q5 900 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 MAP7D3Q8IWC1 876 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 CCDC185Q8N715 623 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 KCTD6Q8NC69 237 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 WDR36Q8NI36 951 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 KIF18AQ8NI77 898 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 TEKT4Q8WW24 435 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 NTAN1Q96AB6 310 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 RBM41Q96IZ5 413 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 PSMB7Q99436 277 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 DDX50Q9BQ39 737 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 SNRNP25Q9BV90 132 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 RAB6CQ9H0N0 254 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 GPATCH2LQ9NWQ4 482 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 SEPT3Q9UH03 358 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 FZD10Q9ULW2 581 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 PCDHA3Q9Y5H8 950 aa12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 ZFC3H1O60293 1989 aaKnown RBP12.68□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC7A4O43246 635 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 RNGTTO60942 597 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 NEBLO76041 1014 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ATP1A1P05023 1023 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ITGA2BP08514 1039 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 RARAP10276 462 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 TCF4P15884 667 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ADRA1BP35368 520 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ARL4AP40617 200 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 CDH6P55285 790 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 FOXK1P85037 733 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC25A11Q02978 314 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 SETMARQ53H47 684 aaPredicted RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 PPP6R3Q5H9R7 873 aaPredicted RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 PITRM1Q5JRX3 1037 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 AGBL4Q5VU57 503 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 NADSYN1Q6IA69 706 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 GUSBP11Q6P575 273 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 RBM44Q6ZP01 1051 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 PSTKQ8IV42 348 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 MFN1Q8IWA4 741 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC22A18ASQ8N1D0 253 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ARFGAP1Q8N6T3 406 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 OR13H1Q8NG92 308 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 KRT35Q92764 455 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ARRDC3Q96B67 414 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 IFT43Q96FT9 208 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 HES6Q96HZ4 224 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 BTN2A3PQ96KV6 586 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 FCRL2Q96LA5 508 aaPredicted RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 PRICKLE1Q96MT3 831 aaPredicted RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 PEBP4Q96S96 227 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ARHGAP9Q9BRR9 750 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 CALN1Q9BXU9 219 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 MAK16Q9BXY0 300 aaKnown RBP12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 SIK2Q9H0K1 926 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 STIM2Q9P246 746 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 ACSL6Q9UKU0 697 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 PCDHGA7Q9Y5G6 932 aa12.67□□□□□ -0.38
CLSTN3-208ENST00000538933 TRPM6Q9BX84 2022 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 TYW5A2RUC4 315 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 EME2A4GXA9 379 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 NEMP2A6NFY4 417 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 KCNU1A8MYU2 1149 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 H3BRJ5 948 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 DAPK3O43293 454 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 CREB3O43889 395 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 PAGE1O75459 146 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ZRANB2O95218 330 aaKnown RBP eCLIP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ALPPL2P10696 532 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 TCP1P17987 556 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 IL1R2P27930 398 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC5A2P31639 672 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 MARCKSL1P49006 195 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 RPS24P62847 133 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ECT2LQ008S8 904 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 CNTN1Q12860 1018 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ZNF177Q13360 481 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ELAVL3Q14576 367 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 CLCA4Q14CN2 919 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 PDK2Q15119 407 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 IGFBP7Q16270 282 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 CDKN3Q16667 212 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ACBD5Q5T8D3 534 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 FOXR1Q6PIV2 292 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 LRRC31Q6UY01 552 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 BNIPLQ7Z465 357 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 CHSY1Q86X52 802 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 KATNAL2Q8IYT4 538 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 RCOR2Q8IZ40 523 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 APCDD1Q8J025 514 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms