RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 IL12RB1P42701 662 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 SEPHS1P49903 392 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 RPL14P50914 215 aaKnown RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 RPS6P62753 249 aaKnown RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 GCNT1Q02742 428 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 TAP1Q03518 808 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 PRKCDQ05655 676 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 ZNF33BQ06732 778 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 SNTA1Q13424 505 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 PIGHQ14442 188 aaPredicted RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 STARD3Q14849 445 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 PDK2Q15119 407 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 SPATS1Q496A3 300 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 ASPRV1Q53RT3 343 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 KCNT1Q5JUK3 1230 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 STYK1Q6J9G0 422 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 PMF1Q6P1K2 205 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 USP17L2Q6R6M4 530 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 CREB3L2Q70SY1 520 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 GDPD3Q7L5L3 318 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 R3HCC1LQ7Z5L2 792 aaKnown RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 LINC00518Q8N0U6 118 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 RDH13Q8NBN7 331 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 SMG8Q8ND04 991 aaKnown RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 MCFD2Q8NI22 146 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 SETD6Q8TBK2 473 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 TAS1R2Q8TE23 839 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 NCLNQ969V3 563 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 COA7Q96BR5 231 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 FAF2Q96CS3 445 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 MARK4Q96L34 752 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 HEXIM2Q96MH2 286 aaKnown RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 RDH12Q96NR8 316 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 TRAF4Q9BUZ4 470 aaPredicted RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 FTHL17Q9BXU8 183 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 DGCR6LQ9BY27 220 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 SLIRPQ9GZT3 109 aaKnown RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 CPVLQ9H3G5 476 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 RNPEPQ9H4A4 650 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 PRDM8Q9NQV8 689 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 KCNQ5Q9NR82 932 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 SMYD2Q9NRG4 433 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 ACTR3BQ9P1U1 418 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 PAK5Q9P286 719 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 TRMT6Q9UJA5 497 aaKnown RBP12.5□□□□□ -0.41
USP3-203ENST00000538686 PMF1-BGLAPU3KQ54 211 aa12.5□□□□□ -0.41
USP3-203ENST00000538686 ADGRA2Q96PE1 1338 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 CAPN5O15484 640 aaPredicted RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 SRP72O76094 671 aaKnown RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 GH2P01242 217 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 SLC4A1P02730 911 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 GP5P40197 560 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 GRIA1P42261 906 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 RPS5P46782 204 aaKnown RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 EVX2Q03828 476 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 EPS8Q12929 822 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PLCL1Q15111 1095 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 ADPRMQ3LIE5 342 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 ATP13A4Q4VNC1 1196 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PRR16Q569H4 304 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 GRTP1Q5TC63 336 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 C1orf186Q6ZWK4 172 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 NIPA1Q7RTP0 329 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TBC1D21Q8IYX1 336 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 C8orf59Q8N0T1 100 aaPredicted RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 XXYLT1Q8NBI6 393 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 NDNFQ8TB73 568 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TGFBRAP1Q8WUH2 860 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 CIDECQ96AQ7 238 aaPredicted RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 DACT3Q96B18 629 aaPredicted RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 NSUN4Q96CB9 384 aaKnown RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 FIZ1Q96SL8 496 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 C2orf40Q9H1Z8 148 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 MUC13Q9H3R2 512 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PLSCR3Q9NRY6 295 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 MRPL39Q9NYK5 338 aaKnown RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 ZNF639Q9UID6 485 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 OSGIN1Q9UJX0 560 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 AP4E1Q9UPM8 1137 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PDE10AQ9Y233 779 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PAPPAQ13219 1627 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PNMA8CA0A1B0GUJ8 204 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TOR1AO14656 332 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TPP1O14773 563 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 YKT6O15498 198 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 DFNA5O60443 496 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 CDK14O94921 469 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 GOT2P00505 430 aaKnown RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 PSKH1P11801 424 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 ITGA2P17301 1181 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 ELK4P28324 431 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 MAGEA6P43360 314 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PRKAA1Q13131 559 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 MTM1Q13496 603 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TBRG1Q3YBR2 411 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 CATSPEREQ5SY80 951 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 C1orf220Q5T0J3 134 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PRMT9Q6P2P2 845 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 P2RY8Q86VZ1 359 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PLD3Q8IV08 490 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms