RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 WRAP53Q9BUR4 548 aaKnown RBP13.18□□□□□ -0.3
CHFR-216ENST00000538235 SLC25A51Q9H1U9 297 aa13.18□□□□□ -0.3
CHFR-216ENST00000538235 ATP13A3Q9H7F0 1226 aa13.18□□□□□ -0.3
CHFR-216ENST00000538235 B4GALT6Q9UBX8 382 aa13.18□□□□□ -0.3
CHFR-216ENST00000538235 FARP1Q9Y4F1 1045 aaPredicted RBP13.18□□□□□ -0.3
CHFR-216ENST00000538235 PCDHB9Q9Y5E1 797 aa13.18□□□□□ -0.3
CHFR-216ENST00000538235 ASCC3Q8N3C0 2202 aaKnown RBP13.17□□□□□ -0.3
CHFR-216ENST00000538235 H0Y8X5 98 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 MAP3K13O43283 966 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 AP1G1O43747 822 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 MMP20O60882 483 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 NDUFS2O75306 463 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 METTL18O95568 372 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 CPP00450 1065 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 ATXN1LP0C7T5 689 aaKnown RBP13.17□□□□□ -0.3
CHFR-216ENST00000538235 ZSCAN5DPP0CG00 497 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 SERPINA4P29622 427 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 KCNJ1P48048 391 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 GALNT3Q14435 633 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 ELF2Q15723 593 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 CNGA3Q16281 694 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 CDKN3Q16667 212 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 ANKRD20A2Q5SQ80 823 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 ANKRD20A1Q5TYW2 823 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 ANKRD20A3Q5VUR7 823 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 PAPD7Q5XG87 772 aaKnown RBP13.17□□□□□ -0.3
CHFR-216ENST00000538235 FBXL19Q6PCT2 694 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 GCNT7Q6ZNI0 430 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 CYP2U1Q7Z449 544 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 HORMAD1Q86X24 394 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 CADM4Q8NFZ8 388 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 PDCD6IPQ8WUM4 868 aaKnown RBP13.17□□□□□ -0.3
CHFR-216ENST00000538235 UBE2Q2Q8WVN8 375 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 SNX19Q92543 992 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 PIGKQ92643 395 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 EID2BQ96D98 161 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 RTP4Q96DX8 246 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 PPP1R16AQ96I34 528 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 MRGPRX2Q96LB1 330 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 ZNF641Q96N77 438 aaPredicted RBP13.17□□□□□ -0.3
CHFR-216ENST00000538235 SPATA13Q96N96 652 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 MCCC1Q96RQ3 725 aaPredicted RBP13.17□□□□□ -0.3
CHFR-216ENST00000538235 IRF2BPLQ9H1B7 796 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 GBA3Q9H227 469 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 PREBQ9HCU5 417 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 KLHL8Q9P2G9 620 aaPredicted RBP13.17□□□□□ -0.3
CHFR-216ENST00000538235 AMACRQ9UHK6 382 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 NCKAP1Q9Y2A7 1128 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 SPO11Q9Y5K1 396 aa13.17□□□□□ -0.3
CHFR-216ENST00000538235 CEP250Q9BV73 2442 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3DA0A087WVF3 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3IA0A087WXS9 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3EA0A087X179 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3KA0A087X1G2 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 A0A1W2PPC4 97 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 A0A1W2PR77 199 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3FA6NER0 549 aaPredicted RBP13.16□□□□□ -0.3
CHFR-216ENST00000538235 IGLON5A6NGN9 336 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 MEI4A8MW99 385 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3LB9A6J9 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 GFRA3O60609 400 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 PMPCBO75439 489 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 RETP07949 1114 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 C1SP09871 688 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3HP0C7X1 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 PIRTP0C851 137 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 CCR5P51681 352 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 BYSLQ13895 437 aaKnown RBP13.16□□□□□ -0.3
CHFR-216ENST00000538235 PCSK7Q16549 785 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 QPCTQ16769 361 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TMEM52BQ4KMG9 183 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 KCTD16Q68DU8 428 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3GQ6DHY5 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3CQ6IPX1 549 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 DARS2Q6PI48 645 aaKnown RBP13.16□□□□□ -0.3
CHFR-216ENST00000538235 BRAT1Q6PJG6 821 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 DPPA4Q7L190 304 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 KDELC2Q7Z4H8 507 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 CREG2Q8IUH2 290 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TBC1D3Q8IZP1 549 aaPredicted RBP13.16□□□□□ -0.3
CHFR-216ENST00000538235 TMEM145Q8NBT3 493 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 LPCAT1Q8NF37 534 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 NSMCE1Q8WV22 266 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 FCRL5Q96RD9 977 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 AP1M1Q9BXS5 423 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 SEMA4AQ9H3S1 761 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 CAPN10Q9HC96 672 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 TM9SF3Q9HD45 589 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 DYRK4Q9NR20 520 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 MBNL1Q9NR56 388 aaKnown RBP13.16□□□□□ -0.3
CHFR-216ENST00000538235 ZKSCAN5Q9Y2L8 839 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 PPIL1Q9Y3C6 166 aa13.16□□□□□ -0.3
CHFR-216ENST00000538235 ZFC3H1O60293 1989 aaKnown RBP13.16□□□□□ -0.3
CHFR-216ENST00000538235 PIEZO1Q92508 2521 aa13.15□□□□□ -0.3
CHFR-216ENST00000538235 A0A0J9YYE9 177 aa13.15□□□□□ -0.3
CHFR-216ENST00000538235 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.15□□□□□ -0.3
CHFR-216ENST00000538235 GOLGA6L9A6NEM1 432 aa13.15□□□□□ -0.3
CHFR-216ENST00000538235 LRRC72A6NJI9 287 aa13.15□□□□□ -0.3
CHFR-216ENST00000538235 GOLGA8CPA6NN73 597 aa13.15□□□□□ -0.3
CHFR-216ENST00000538235 SLC31A1O15431 190 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms