RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 CTSEP14091 401 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 NFKBIAP25963 317 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 MMP12P39900 470 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 LSSP48449 732 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 HCAR3P49019 387 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 ZNF165P49910 485 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 PCBP4P57723 403 aaKnown RBP13.23□□□□□ -0.29
RTN3-207ENST00000536011 AP1S1P61966 158 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 GABREP78334 506 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 BCL2L1Q07817 233 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 COL9A2Q14055 689 aaPredicted RBP13.23□□□□□ -0.29
RTN3-207ENST00000536011 ACAP1Q15027 740 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 TPRG1LQ5T0D9 272 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 TMCO4Q5TGY1 634 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 LVRNQ6Q4G3 990 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 RBM44Q6ZP01 1051 aaKnown RBP13.23□□□□□ -0.29
RTN3-207ENST00000536011 SRLQ86TD4 932 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 RBFAQ8N0V3 343 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 ZNF248Q8NDW4 579 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 UBL7Q96S82 380 aaPredicted RBP13.23□□□□□ -0.29
RTN3-207ENST00000536011 LGMNQ99538 433 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 BOCQ9BWV1 1114 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 POLR1BQ9H9Y6 1135 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 MBNL1Q9NR56 388 aaKnown RBP13.23□□□□□ -0.29
RTN3-207ENST00000536011 TMEM63CQ9P1W3 806 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 PCDHB1Q9Y5F3 818 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 BAHCC1Q9P281 2608 aa13.23□□□□□ -0.29
RTN3-207ENST00000536011 BPTFQ12830 3046 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 A0A1B0GTH6 734 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 A0A1W2PQ67 120 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 H3BRJ5 948 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 DXOO77932 396 aaKnown RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 ELFN1P0C7U0 828 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 HOXB3P14651 431 aaPredicted RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 ERCC2P18074 760 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 KELP23276 732 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 MIPP30301 263 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 PCK1P35558 622 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 HSPA9P38646 679 aaKnown RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 ARL4AP40617 200 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 LIG3P49916 1009 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 HK3P52790 923 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 UCNP55089 124 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 ADKP55263 362 aaKnown RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 ERVPABLB-1P60509 514 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 IL10RBQ08334 325 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 NSUN2Q08J23 767 aaKnown RBP eCLIP13.22□□□□□ -0.29
RTN3-207ENST00000536011 MTM1Q13496 603 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 NFATC4Q14934 902 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 AGERQ15109 404 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 BROXQ5VW32 411 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 AFMIDQ63HM1 303 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 GUSBP11Q6P575 273 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 ZNF571Q7Z3V5 609 aaPredicted RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 GKN2Q86XP6 184 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 CAMK1DQ8IU85 385 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 BBS5Q8N3I7 341 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 ARL10Q8N8L6 244 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 NETO2Q8NC67 525 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 TSEN2Q8NCE0 465 aaKnown RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 ZNF599Q96NL3 588 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 KCTD15Q96SI1 283 aaPredicted RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 SLC39A8Q9C0K1 460 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 THSD1Q9NS62 852 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 KLQ9UEF7 1012 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 SEPT3Q9UH03 358 aa13.22□□□□□ -0.29
RTN3-207ENST00000536011 BZW2Q9Y6E2 419 aaKnown RBP13.22□□□□□ -0.29
RTN3-207ENST00000536011 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.21□□□□□ -0.29
RTN3-207ENST00000536011 MUSKO15146 869 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 LRCH4O75427 683 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 GCATO75600 419 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 MPOP05164 745 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 MYF5P13349 255 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 TSHRP16473 764 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 ITPKBP27987 946 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 RBMS1P29558 406 aaKnown RBP13.21□□□□□ -0.29
RTN3-207ENST00000536011 SERPINB6P35237 376 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 C1orf61Q13536 156 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 ZNF235Q14590 738 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 INPP5AQ14642 412 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 CA9Q16790 459 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 ISXQ2M1V0 245 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 WSCD2Q2TBF2 565 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 SOWAHCQ53LP3 525 aaPredicted RBP13.21□□□□□ -0.29
RTN3-207ENST00000536011 BOLA3Q53S33 107 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 TDRD12Q587J7 1177 aaKnown RBP13.21□□□□□ -0.29
RTN3-207ENST00000536011 FIGNQ5HY92 759 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 CAVIN1Q6NZI2 390 aaKnown RBP13.21□□□□□ -0.29
RTN3-207ENST00000536011 IGF2-ASQ6U949 168 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 HID1Q8IV36 788 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 SLC35F3Q8IY50 421 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 OR6C4Q8NGE1 309 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 NSMCE1Q8WV22 266 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 IQCDQ96DY2 449 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 WDR92Q96MX6 357 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 PSKH2Q96QS6 385 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 PEBP4Q96S96 227 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 APOOQ9BUR5 198 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 KCTD5Q9NXV2 234 aa13.21□□□□□ -0.29
RTN3-207ENST00000536011 PADI4Q9UM07 663 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms