RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 SHROOM1Q2M3G4 852 aaPredicted RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 ZNF385BQ569K4 471 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 TFDP3Q5H9I0 405 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 RABGAP1LQ5R372 815 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 UBAP2Q5T6F2 1119 aaKnown RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 C1QTNF12Q5T7M4 302 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 TEDDM1Q5T9Z0 273 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 RNASEH2BQ5TBB1 312 aaKnown RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 OGFRL1Q5TC84 451 aaPredicted RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 SLFN13Q68D06 897 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 CNKSR3Q6P9H4 555 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 PGM2L1Q6PCE3 622 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 LIPIQ6XZB0 460 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 ATG14Q6ZNE5 492 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 NCCRP1Q6ZVX7 275 aaPredicted RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 OTOP2Q7RTS6 562 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 PRRT2Q7Z6L0 340 aaPredicted RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 TMEM110Q86TL2 294 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 SLC26A11Q86WA9 606 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 ARHGEF19Q8IW93 802 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 TPH2Q8IWU9 490 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 KBTBD2Q8IY47 623 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 FBXW8Q8N3Y1 598 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 DTX3Q8N9I9 347 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 FBXL13Q8NEE6 735 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 DQX1Q8TE96 717 aaKnown RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 ZNF526Q8TF50 670 aaPredicted RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 CHURC1Q8WUH1 139 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 PCDHB18PQ96TA0 734 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 CCDC106Q9BWC9 280 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 MRPL1Q9BYD6 325 aaKnown RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 GCOM2Q9BZD3 368 aaPredicted RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 NMUR2Q9GZQ4 415 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 MAF1Q9H063 256 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 IRF2BPLQ9H1B7 796 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 ST6GALNAC4Q9H4F1 302 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 KCNK13Q9HB14 408 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 PNPLA8Q9NP80 782 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 FBXO6Q9NRD1 293 aaPredicted RBP6.7□□□□□ -1.34
USP28-202ENST00000535607 RBPJLQ9UBG7 517 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 TUBGCP4Q9UGJ1 667 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 ZNHIT2Q9UHR6 403 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 FEM1BQ9UK73 627 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 FBXO10Q9UK96 956 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 GRID1Q9ULK0 1009 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 PSMD13Q9UNM6 376 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 AGTPBP1Q9UPW5 1226 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 AFG3L2Q9Y4W6 797 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 AP4S1Q9Y587 144 aa6.7□□□□□ -1.34
USP28-202ENST00000535607 THSD7BQ9C0I4 1608 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 FAM237BA0A1B0GVD1 139 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 E7ESA3 106 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 VILLO15195 856 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 SLC22A2O15244 555 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 DKC1O60832 514 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP28-202ENST00000535607 H2AFYO75367 372 aaKnown RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 KRT7P08729 469 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 CDK4P11802 303 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 MTHFD2P13995 350 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 ETS2P15036 469 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 BGNP21810 368 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 XPAP23025 273 aaPredicted RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 S100A1P23297 94 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 ADSSP30520 456 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 GCLMP48507 274 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 CDK9P50750 372 aaKnown RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 OAZ1P54368 228 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 ALDH18A1P54886 795 aaKnown RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 AQP5P55064 265 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 PSMC6P62333 389 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 NFATC3Q12968 1075 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 SPP2Q13103 211 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 MPP3Q13368 585 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 SNAPC2Q13487 334 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 DPYSQ14117 519 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 UGT8Q16880 541 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 USP41Q3LFD5 358 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 ZC2HC1CQ53FD0 456 aaPredicted RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 METTL21CQ5VZV1 264 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 LRRC8BQ6P9F7 803 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 TRMT10BQ6PF06 316 aaKnown RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 DHRS4L2Q6PKH6 230 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 RAPH1Q70E73 1250 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 FRA10AC1Q70Z53 315 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 FASTKD5Q7L8L6 764 aaKnown RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 MIER3Q7Z3K6 550 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 RTN4RL1Q86UN2 441 aaPredicted RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 SLC47A2Q86VL8 602 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 CXorf67Q86X51 503 aaPredicted RBP6.69□□□□□ -1.34
USP28-202ENST00000535607 PALB2Q86YC2 1186 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 RHPN2Q8IUC4 686 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 THNSL1Q8IYQ7 743 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 DDHD1Q8NEL9 900 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 HM13Q8TCT9 377 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 ACER1Q8TDN7 264 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 ACMSDQ8TDX5 336 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 DCAKDQ8WVC6 231 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 SLC44A1Q8WWI5 657 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 GAB3Q8WWW8 586 aa6.69□□□□□ -1.34
USP28-202ENST00000535607 PRPF31Q8WWY3 499 aaKnown RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms