RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 NAPEPLDQ6IQ20 393 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 RETSATQ6NUM9 610 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 SHFQ7M4L6 423 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 C16orf82Q7Z2V1 217 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 RBM23Q86U06 439 aaKnown RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 FAM160B2Q86V87 743 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 EXOC3L1Q86VI1 746 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 ARMC8Q8IUR7 673 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 AADATQ8N5Z0 425 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 CLEC18CQ8NCF0 446 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 KCNH5Q8NCM2 988 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 C11orf65Q8NCR3 313 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 PPHLN1Q8NEY8 458 aaKnown RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 HTRA1Q92743 480 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 HDAC2Q92769 488 aaKnown RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 LMLNQ96KR4 655 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 ZNF385AQ96PM9 386 aaKnown RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 SIN3AQ96ST3 1273 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 EYA3Q99504 573 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.88□□□□□ -1.95
CD44-238ENST00000534296 MSTO1Q9BUK6 570 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 C1QTNF4Q9BXJ3 329 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 INTS2Q9H0H0 1204 aaKnown RBP2.88□□□□□ -1.95
CD44-238ENST00000534296 SLC32A1Q9H598 525 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 CYSLTR2Q9NS75 346 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 SMC4Q9NTJ3 1288 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 HDAC6Q9UBN7 1215 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 TMEM98Q9Y2Y6 226 aa2.88□□□□□ -1.95
CD44-238ENST00000534296 EVPLQ92817 2033 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 J3KRW8 73 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 TIMM23O14925 209 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 CLGNO14967 610 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 SNRNP70P08621 437 aaKnown RBP2.87□□□□□ -1.95
CD44-238ENST00000534296 HSPA1AP0DMV8 641 aaKnown RBP2.87□□□□□ -1.95
CD44-238ENST00000534296 HSPA1BP0DMV9 641 aaKnown RBP2.87□□□□□ -1.95
CD44-238ENST00000534296 GOLGA8DPQ0D2H9 430 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 MYBPHQ13203 477 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 CAMK1Q14012 370 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 HIST2H2ACQ16777 129 aaPredicted RBP2.87□□□□□ -1.95
CD44-238ENST00000534296 FBXO43Q4G163 708 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 PPP6R3Q5H9R7 873 aaPredicted RBP2.87□□□□□ -1.95
CD44-238ENST00000534296 SERTAD4-AS1Q5TG53 156 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 WBP2NLQ6ICG8 309 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 TMED8Q6PL24 325 aaPredicted RBP2.87□□□□□ -1.95
CD44-238ENST00000534296 PRSS57Q6UWY2 283 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 GSTA5Q7RTV2 222 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 TADA2BQ86TJ2 420 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 HEATR4Q86WZ0 1026 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 PARP16Q8N5Y8 322 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 TSPYL6Q8N831 410 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 SCCPDHQ8NBX0 429 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 GJC3Q8NFK1 279 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 IL17REQ8NFR9 667 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 LMO3Q8TAP4 145 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 ZCCHC10Q8TBK6 192 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 GPT2Q8TD30 523 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 UCMAQ8WVF2 138 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 HERVK_113Q902F9 699 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 SMARCE1Q969G3 411 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 RNF125Q96EQ8 232 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 EPYCQ99645 322 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 LMAN2LQ9H0V9 348 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 PREBQ9HCU5 417 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 UBN1Q9NPG3 1134 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 SMYD2Q9NRG4 433 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 PPP1R14DQ9NXH3 145 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 HCN3Q9P1Z3 774 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 PEMTQ9UBM1 199 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 ZNF69Q9UC07 566 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 MALT1Q9UDY8 824 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 GJD2Q9UKL4 321 aa2.87□□□□□ -1.95
CD44-238ENST00000534296 ATXN2Q99700 1313 aaKnown RBP2.87□□□□□ -1.95
CD44-238ENST00000534296 SAA2-SAA4A0A096LPE2 208 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 A0A1B0GVC2 190 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 hDV102S1A0JD36 115 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 PABPN1LA6NDY0 278 aaKnown RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 FAM90A7PA6NKC0 464 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 FAM90A22PA8MWA6 464 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 FAM90A12PA8MX19 464 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 FAM90A23PA8MXZ1 464 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 TNPO2O14787 897 aaKnown RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 WNT9BO14905 357 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 BUB3O43684 328 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 KRT36O76013 467 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 RGS11O94810 467 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 IGHV4-30-4P0DP06 118 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 SRD5A1P18405 259 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 ITGB8P26012 769 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 STX2P32856 288 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 RYKP34925 604 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 CTCFP49711 727 aaPredicted RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 CDH15P55291 814 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 GEMIN4P57678 1058 aaKnown RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 ERVFC1-1P60608 527 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 NEXNQ0ZGT2 675 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 GALNT2Q10471 571 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 TDGQ13569 410 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 TNFAIP1Q13829 316 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 SF3B4Q15427 424 aaKnown RBP eCLIP2.86□□□□□ -1.95
CD44-238ENST00000534296 ATP13A5Q4VNC0 1218 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms