RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PHTF1Q9UMS5 762 aa14.57□□□□□ -0.08
CPSF1-206ENST00000531480 ZFR2Q9UPR6 939 aaKnown RBP14.57□□□□□ -0.08
CPSF1-206ENST00000531480 RALGAPA1Q6GYQ0 2036 aa14.57□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3DA0A087WVF3 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3IA0A087WXS9 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3EA0A087X179 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3KA0A087X1G2 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 A0A1W2PPC4 97 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 CTAGE9A4FU28 777 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3FA6NER0 549 aaPredicted RBP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3LB9A6J9 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 PGRMC1O00264 195 aaKnown RBP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 LRP3O75074 770 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 PDHA1P08559 390 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3HP0C7X1 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 NFKB1P19838 968 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 CA4P22748 312 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 GDF10P55107 478 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 AGERQ15109 404 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 LONRF2Q1L5Z9 754 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 ZNF284Q2VY69 593 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 FAM182AQ5T1J6 154 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 ARMC12Q5T9G4 340 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 LYSMD4Q5XG99 296 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3GQ6DHY5 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3CQ6IPX1 549 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 KDELC1Q6UW63 502 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 PID1Q7Z2X4 250 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 ADAT2Q7Z6V5 191 aaKnown RBP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 HORMAD1Q86X24 394 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 CREG2Q8IUH2 290 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TBC1D3Q8IZP1 549 aaPredicted RBP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 CBARPQ8N350 705 aaPredicted RBP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 C1orf54Q8WWF1 131 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 SCRN2Q96FV2 425 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 MS4A14Q96JA4 679 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 C16orf45Q96MC5 204 aaPredicted RBP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 LYSMD1Q96S90 227 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 RBM15Q96T37 977 aaKnown RBP eCLIP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 C1QTNF2Q9BXJ5 285 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 EBF2Q9HAK2 575 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 PCDH12Q9NPG4 1184 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 KLHL8Q9P2G9 620 aaPredicted RBP14.56□□□□□ -0.08
CPSF1-206ENST00000531480 TTLL3Q9Y4R7 772 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 PCDHB9Q9Y5E1 797 aa14.56□□□□□ -0.08
CPSF1-206ENST00000531480 PCDH15Q96QU1 1955 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 LOC285095A0A1B0GVY8 99 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 ZNF185O15231 689 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 RNGTTO60942 597 aaKnown RBP14.55□□□□□ -0.08
CPSF1-206ENST00000531480 STK10O94804 968 aaKnown RBP14.55□□□□□ -0.08
CPSF1-206ENST00000531480 MT-CYBP00156 380 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-206ENST00000531480 CPP00450 1065 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 EPOP01588 193 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 TGM1P22735 817 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 ITPKAP23677 461 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 CD27P26842 260 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 DHPSP49366 369 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-206ENST00000531480 RPS21P63220 83 aaKnown RBP14.55□□□□□ -0.08
CPSF1-206ENST00000531480 TUBB4BP68371 445 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 CREB5Q02930 508 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 RALGDSQ12967 914 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 P3H1Q32P28 736 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 WDR45BQ5MNZ6 344 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 SYCP2LQ5T4T6 812 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 ITPRIPL1Q6GPH6 555 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 DPPA4Q7L190 304 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 SYT12Q8IV01 421 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 FAM71DQ8N9W8 422 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 SPATA22Q8NHS9 363 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 OXNAD1Q96HP4 312 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-206ENST00000531480 FEM1CQ96JP0 617 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 PCDH9Q9HC56 1237 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 TMEM74BQ9NUR3 256 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 FAM153AQ9UHL3 310 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 GGT7Q9UJ14 662 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 DMTF1Q9Y222 760 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 ITM2BQ9Y287 266 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 SAR1BQ9Y6B6 198 aa14.55□□□□□ -0.08
CPSF1-206ENST00000531480 EP300Q09472 2414 aaPredicted RBP14.54□□□□□ -0.08
CPSF1-206ENST00000531480 A0A0J9YYE9 177 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 A0A1W2PQU0 124 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 TRBC1P01850 177 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 ITIH2P19823 946 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 GRIA4P48058 902 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 CDK18Q07002 472 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 MPP3Q13368 585 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 FGL2Q14314 439 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 LPAL2Q16609 132 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 CFAP58Q5T655 872 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 KCTD11Q693B1 232 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 ERAP2Q6P179 960 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 CYP2U1Q7Z449 544 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 RAVER1Q8IY67 606 aaKnown RBP14.54□□□□□ -0.08
CPSF1-206ENST00000531480 DEFB119Q8N690 84 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 TMEM145Q8NBT3 493 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 CCDC110Q8TBZ0 833 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 MRGPRX2Q96LB1 330 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 PPP1R2P1Q96PQ5 205 aa14.54□□□□□ -0.08
CPSF1-206ENST00000531480 LENG8Q96PV6 779 aaPredicted RBP14.54□□□□□ -0.08
CPSF1-206ENST00000531480 RNF14Q9UBS8 474 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms