RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 GIMAP1Q8WWP7 306 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 PRPF31Q8WWY3 499 aaKnown RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 ZKSCAN4Q969J2 545 aaPredicted RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 SARAFQ96BY9 339 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 MMABQ96EY8 250 aaPredicted RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 HIC2Q96JB3 615 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 CCDC17Q96LX7 622 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 ZNF396Q96N95 335 aaPredicted RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 ABHD1Q96SE0 405 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 ZNF347Q96SE7 839 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 IWS1Q96ST2 819 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 IFT27Q9BW83 186 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 GATA5Q9BWX5 397 aaPredicted RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 GLIS2Q9BZE0 524 aaPredicted RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 EDEM3Q9BZQ6 932 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 TSPY26PQ9H489 355 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 Q9N2J8 555 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 TXNRD2Q9NNW7 524 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.42□□□□□ -1.86
CD44-229ENST00000528672 ASAH2Q9NR71 780 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 COMMD8Q9NX08 183 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 MARCH4Q9P2E8 410 aaPredicted RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 KLHL13Q9P2N7 655 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 NLKQ9UBE8 527 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 ARPP21Q9UBL0 812 aaPredicted RBP3.42□□□□□ -1.86
CD44-229ENST00000528672 FBXL17Q9UF56 701 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 NENFQ9UMX5 172 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 ICKQ9UPZ9 632 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 TNFSF13BQ9Y275 285 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 CLDN16Q9Y5I7 305 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 IKBKGQ9Y6K9 419 aa3.42□□□□□ -1.86
CD44-229ENST00000528672 hCG_1809904A0A1W2PP81 198 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 A0A1W2PPE2 198 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 A0A1W2PR64 198 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 TARSL2A2RTX5 802 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 GTPBP10A4D1E9 387 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 GLOD5A6NK44 160 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 CDRT15L2A8MXV6 281 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 TARM1B6A8C7 271 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 NDUFS3O75489 264 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 GCATO75600 419 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 GGPS1O95749 300 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 IGLV2-14P01704 120 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 HEXAP06865 529 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 AKR1A1P14550 325 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 ST6GAL1P15907 406 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 TMEM11P17152 192 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 MUTP22033 750 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 HOXD10P28358 340 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 MSH2P43246 934 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 TNNT3P45378 269 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 CYP2J2P51589 502 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 STAT2P52630 851 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 EFNA5P52803 228 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 RAD23AP54725 363 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 ARSFP54793 590 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 RHAGQ02094 409 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 PPARDQ03181 441 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 TMED1Q13445 227 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 OLIG2Q13516 323 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 RUNX2Q13950 521 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 RNPS1Q15287 305 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 RPE65Q16518 533 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 PFKFB3Q16875 520 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 PROSER3Q2NL68 480 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 C5orf22Q49AR2 442 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 PARP10Q53GL7 1025 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 CEP78Q5JTW2 689 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 C9orf152Q5JTZ5 239 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 SLC10A5Q5PT55 438 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 NUGGCQ68CJ6 796 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 TXNDC8Q6A555 127 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 ADALQ6DHV7 355 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 KIAA0930Q6ICG6 404 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 GLDNQ6ZMI3 551 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 TRIM72Q6ZMU5 477 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 DENND5BQ6ZUT9 1274 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 PTF1AQ7RTS3 328 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 SLC29A4Q7RTT9 530 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 RD3Q7Z3Z2 195 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 ZNF804AQ7Z570 1209 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 DNAJB7Q7Z6W7 309 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 RHPN2Q8IUC4 686 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 C16orf71Q8IYS4 520 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 TMEM217Q8N7C4 229 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 GSDMBQ8TAX9 411 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 AFAP1L1Q8TED9 768 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 GDPD5Q8WTR4 605 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 NTN5Q8WTR8 489 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 PGAP3Q96FM1 320 aaPredicted RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 JAKMIP1Q96N16 626 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 TEFMQ96QE5 360 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 SPAG5Q96R06 1193 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 EFHD1Q9BUP0 239 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 QTRT1Q9BXR0 403 aaKnown RBP3.41□□□□□ -1.86
CD44-229ENST00000528672 NUAK2Q9H093 628 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 KIF9Q9HAQ2 790 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 LTB4R2Q9NPC1 389 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 SLC6A13Q9NSD5 602 aa3.41□□□□□ -1.86
CD44-229ENST00000528672 ATP8A2Q9NTI2 1148 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms