RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 LRRC45Q96CN5 670 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PPP1R2P1Q96PQ5 205 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PSKH2Q96QS6 385 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 FAM118BQ9BPY3 351 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 NRSN2Q9GZP1 204 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 RAB17Q9H0T7 212 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 SP110Q9HB58 689 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PDFQ9HBH1 243 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 ATP13A1Q9HD20 1204 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 DNAJC17Q9NVM6 304 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 ELOVL2Q9NXB9 296 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PAK5Q9P286 719 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 VTI1BQ9UEU0 232 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 VPS28Q9UK41 221 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 INTS6Q9UL03 887 aaKnown RBP7.51□□□□□ -1.21
CD44-228ENST00000528455 HS3ST2Q9Y278 367 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 ATP8A1Q9Y2Q0 1164 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 PIEZO1Q92508 2521 aa7.51□□□□□ -1.21
CD44-228ENST00000528455 MIA3Q5JRA6 1907 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 TARSL2A2RTX5 802 aaKnown RBP7.5□□□□□ -1.21
CD44-228ENST00000528455 TBC1D3BA6NDS4 549 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 KCNK1O00180 336 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 MAN2B1O00754 1011 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 TTI1O43156 1089 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 RAD51CO43502 376 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 KAT7O95251 611 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 CD160O95971 181 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 DLDP09622 509 aaKnown RBP7.5□□□□□ -1.21
CD44-228ENST00000528455 HNRNPLP14866 589 aaKnown RBP eCLIP7.5□□□□□ -1.21
CD44-228ENST00000528455 AOC1P19801 751 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 DRD1P21728 446 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 MCM3P25205 808 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 PTPN3P26045 913 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 IVDP26440 423 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 FDFT1P37268 417 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ADCY8P40145 1251 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ARF5P84085 180 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 CDK16Q00536 496 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 SLC10A7Q0GE19 358 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 TCF15Q12870 199 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 PTK6Q13882 451 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 CYTH1Q15438 398 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 GEN1Q17RS7 908 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 TMEM215Q68D42 235 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 MBLAC2Q68D91 279 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 DUPD1Q68J44 220 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ITPRIPL1Q6GPH6 555 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 GRAMD4Q6IC98 578 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ARHGAP36Q6ZRI8 547 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ZNF354CQ86Y25 554 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 JAMLQ86YT9 394 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 IFT20Q8IY31 132 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ZNF567Q8N184 647 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 CNTD1Q8N815 330 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 TMEM105Q8N8V8 129 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ST13P5Q8NFI4 369 aaPredicted RBP7.5□□□□□ -1.21
CD44-228ENST00000528455 UCMAQ8WVF2 138 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.5□□□□□ -1.21
CD44-228ENST00000528455 RUBCNQ92622 972 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 ATOH1Q92858 354 aaPredicted RBP7.5□□□□□ -1.21
CD44-228ENST00000528455 CRELD1Q96HD1 420 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 SHDQ96IW2 340 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 CCDC114Q96M63 670 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 SPATA13Q96N96 652 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 FCRL5Q96RD9 977 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 NELL2Q99435 816 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 P2RY13Q9BPV8 354 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 TRIM56Q9BRZ2 755 aaKnown RBP7.5□□□□□ -1.21
CD44-228ENST00000528455 FAM129AQ9BZQ8 928 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 CEP44Q9C0F1 390 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 SLC25A51Q9H1U9 297 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 C10orf88Q9H8K7 445 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 PCDH9Q9HC56 1237 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 RBM22Q9NW64 420 aaKnown RBP eCLIP7.5□□□□□ -1.21
CD44-228ENST00000528455 WHRNQ9P202 907 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 UBA2Q9UBT2 640 aaPredicted RBP7.5□□□□□ -1.21
CD44-228ENST00000528455 SLC25A13Q9UJS0 675 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 CA14Q9ULX7 337 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 SLC8A2Q9UPR5 921 aa7.5□□□□□ -1.21
CD44-228ENST00000528455 AAR2Q9Y312 384 aaKnown RBP7.5□□□□□ -1.21
CD44-228ENST00000528455 KMT2EQ8IZD2 1858 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 TICRRQ7Z2Z1 1910 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GOLGA6CA6NDK9 693 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GOLGA6BA6NDN3 693 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 ERI2A8K979 691 aaKnown RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 PRRT4C9JH25 899 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 SPECC1L-ADORA2AF8WAN1 911 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 H0Y858 1186 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 AP3B1O00203 1094 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 RNF103O00237 685 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 FBXO24O75426 580 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 ANXA9O76027 345 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 NEBLO76041 1014 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 WISP1O95388 367 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 IFNB1P01574 187 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 EPOP01588 193 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 APODP05090 189 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GOLGA6DP0CG33 693 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 VAV1P15498 845 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GLDCP23378 1020 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms