RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 KNDC1Q76NI1 1749 aa4.97□□□□□ -1.61
CD44-220ENST00000525688 MST1RQ04912 1400 aa4.97□□□□□ -1.61
CD44-220ENST00000525688 EMSYQ7Z589 1322 aa4.97□□□□□ -1.61
CD44-220ENST00000525688 ARID1BQ8NFD5 2236 aaPredicted RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 PLEKHH1Q9ULM0 1364 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 KCNJ18B7U540 433 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 HLA-DQA2P01906 255 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 CHRM4P08173 479 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 CCDC175P0C221 793 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 INSRRP14616 1297 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 HSPA4P34932 840 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 KRTAP10-2P60368 255 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 EIF4A2Q14240 407 aaKnown RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 KPNB1Q14974 876 aaKnown RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 ANXA2RQ3ZCQ2 193 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 C1orf141Q5JVX7 400 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 NAPEPLDQ6IQ20 393 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 RAB12Q6IQ22 244 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 KDELC1Q6UW63 502 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 TFAP2DQ7Z6R9 452 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 RHPN2Q8IUC4 686 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 CEP97Q8IW35 865 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 IQCF2Q8IXL9 164 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 DIS3L2Q8IYB7 885 aaKnown RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 RNF168Q8IYW5 571 aaPredicted RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 TBC1D21Q8IYX1 336 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 VPS52Q8N1B4 723 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 BICD2Q8TD16 824 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 ZNF398Q8TD17 642 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 NOC3LQ8WTT2 800 aaKnown RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 NEU4Q8WWR8 484 aaPredicted RBP4.96□□□□□ -1.62
CD44-220ENST00000525688 RAB40AQ8WXH6 277 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 MXD3Q9BW11 206 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 KRTAP9-2Q9BYQ4 174 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 USP44Q9H0E7 712 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 VEZTQ9HBM0 779 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 FANCFQ9NPI8 374 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 KCND2Q9NZV8 630 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 SERGEFQ9UGK8 458 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 PCDHGB4Q9UN71 923 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 NALCNQ8IZF0 1738 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 DLC1Q96QB1 1528 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 ROBO1Q9Y6N7 1651 aa4.96□□□□□ -1.62
CD44-220ENST00000525688 A0A087X1B8 175 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 TMEM247A6NEH6 219 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 UBE2CO00762 179 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 RRHO14718 337 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 CAPN9O14815 690 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 TNFSF14O43557 240 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 ERAL1O75616 437 aaKnown RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 BBOX1O75936 387 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 PGM3O95394 542 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 MLYCDO95822 493 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 SCGB1D1O95968 90 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 CLEC3BP05452 202 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 URODP06132 367 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 QDPRP09417 244 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 UBL4AP11441 157 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 AKR1A1P14550 325 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 TNFRSF1AP19438 455 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 GPD1P21695 349 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 PROZP22891 400 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 TYK2P29597 1187 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 MAPK4P31152 587 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 SH3BGRP55822 239 aaPredicted RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 NLRP5P59047 1200 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 POLR2FP61218 127 aaKnown RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 RBP5P82980 135 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 RHAGQ02094 409 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 BFSP1Q12934 665 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 SLC18A3Q16572 532 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 SNX30Q5VWJ9 437 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 SLC30A9Q6PML9 568 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 SLC22A25Q6T423 547 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 MON1AQ86VX9 555 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 LURAP1LQ8IV03 231 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 UEVLDQ8IX04 471 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 MOSPD2Q8NHP6 518 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 GDAP1Q8TB36 358 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 BRSK1Q8TDC3 778 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 DENND1AQ8TEH3 1009 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 CNOT9Q92600 299 aaKnown RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 CHFRQ96EP1 664 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 ZNF764Q96H86 408 aaPredicted RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 RITA1Q96K30 269 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 CCDC43Q96MW1 224 aaKnown RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 NR1H4Q96RI1 486 aaPredicted RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 FSD1Q9BTV5 496 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 DUSP26Q9BV47 211 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 CADM1Q9BY67 442 aaKnown RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 EPHX3Q9H6B9 360 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 CPNE5Q9HCH3 593 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 Q9N2J8 555 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 IL17RBQ9NRM6 502 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 ARL8BQ9NVJ2 186 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 INTS10Q9NVR2 710 aaKnown RBP4.95□□□□□ -1.62
CD44-220ENST00000525688 RAI14Q9P0K7 980 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 SH3BP4Q9P0V3 963 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 TLK1Q9UKI8 766 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms