RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 USP2O75604 605 aaPredicted RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 AP2A1O95782 977 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 F7P08709 466 aaPredicted RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 RPL9P32969 192 aaKnown RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 NR1H2P55055 460 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 SP2Q02086 613 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 NRG1Q02297 640 aaPredicted RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 NOMO2Q5JPE7 1267 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 GPRIN3Q6ZVF9 776 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 STK40Q8N2I9 435 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 TMEM132CQ8N3T6 1108 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 FAM47BQ8NA70 645 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 GRIN3AQ8TCU5 1115 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 MTIF3Q9H2K0 278 aaKnown RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 NOL11Q9H8H0 719 aaKnown RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 DAPK2Q9UIK4 370 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 CDH22Q9UJ99 828 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 H3BN98 237 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 TRAFD1O14545 582 aaPredicted RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 ANXA5P08758 320 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 HDCP19113 662 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 DGKAP23743 735 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 ASPAP45381 313 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 PIK3CGP48736 1102 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 HK2P52789 917 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 LIMK2P53671 638 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 OGDHQ02218 1023 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 POM121L1PQ3SYA9 428 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 CCDC92Q53HC0 331 aaPredicted RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 GPR158Q5T848 1215 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 TYW3Q6IPR3 259 aaKnown RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 MON1AQ86VX9 555 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 OR4L1Q8NH43 312 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 ACTRT2Q8TDY3 377 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 TBATAQ96M53 351 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 HBEGFQ99075 208 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 AGO3Q9H9G7 860 aaKnown RBP12.74□□□□□ -0.37
USP53-209ENST00000514665 ARHGEF3Q9NR81 526 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 TMPRSS4Q9NRS4 437 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 ZNF180Q9UJW8 692 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 TIMM22Q9Y584 194 aa12.74□□□□□ -0.37
USP53-209ENST00000514665 YJEFN3A6XGL0 299 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 KCNU1A8MYU2 1149 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 MMP3P08254 477 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 UQCRBP14927 111 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 LPOP22079 712 aaPredicted RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 SERPINA4P29622 427 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 TTPAP49638 278 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 GPR15P49685 360 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 ROR2Q01974 943 aaKnown RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 ZNF460Q14592 562 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 PCBP1Q15365 356 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP53-209ENST00000514665 ACSBG2Q5FVE4 666 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 FGD3Q5JSP0 725 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 CLEC6AQ6EIG7 209 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 CNSTQ6PJW8 725 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 DENND6AQ8IWF6 608 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 LINGO1Q96FE5 620 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 FBXL18Q96ME1 805 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 RTKNQ9BST9 563 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 FZD8Q9H461 694 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 RCOR3Q9P2K3 495 aaPredicted RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 BAZ2AQ9UIF9 1905 aaKnown RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 SMIM31A0A1B0GVY4 71 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 PDZK1P1A8MUH7 402 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 GCATO75600 419 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 IFNA14P01570 189 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 NMBRP28336 390 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 SMAD3P84022 425 aaKnown RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 TUSC3Q13454 348 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 LRRC49Q8IUZ0 686 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 C8orf59Q8N0T1 100 aaPredicted RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 CMASQ8NFW8 434 aaPredicted RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 PHF21AQ96BD5 680 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 MINDY3Q9H8M7 445 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 COX7A2P14406 83 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 RPS7P62081 194 aaKnown RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 TAF10Q12962 218 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 SKIV2LQ15477 1246 aaKnown RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 BRMS1LQ5PSV4 323 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 DCLRE1AQ6PJP8 1040 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 MPP5Q8N3R9 675 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 NAT8LQ8N9F0 302 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 RSPH1Q8WYR4 309 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 MAML3Q96JK9 1138 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 PPM1MQ96MI6 270 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 FAM53CQ9NYF3 392 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 PLK2Q9NYY3 685 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 DNMT3LQ9UJW3 386 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 TDRKHQ9Y2W6 561 aaKnown RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 TPRKBQ9Y3C4 175 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 ZNF536O15090 1300 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 A0A0J9YYE9 177 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 A0A1W2PQH9 124 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 PMM2O15305 246 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 RECQL5O94762 991 aaPredicted RBP12.73□□□□□ -0.37
USP53-209ENST00000514665 KCNH1O95259 989 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 MLYCDO95822 493 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 CLCNKBP51801 687 aa12.73□□□□□ -0.37
USP53-209ENST00000514665 PFKPQ01813 784 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms