RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CYP51A1Q16850 503 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 CACHD1Q5VU97 1274 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 C8orf59Q8N0T1 100 aaPredicted RBP13.21□□□□□ -0.3
TCOF1-213ENST00000514442 MAGEE2Q8TD90 523 aaPredicted RBP13.21□□□□□ -0.3
TCOF1-213ENST00000514442 CORO1BQ9BR76 489 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 FTHL17Q9BXU8 183 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 MARCH7Q9H992 704 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 LRP6O75581 1613 aa13.21□□□□□ -0.3
TCOF1-213ENST00000514442 RGPD5Q99666 1765 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF24P17028 368 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 ARL4DP49703 201 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SP2Q02086 613 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 BCL2L1Q07817 233 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TOP3AQ13472 1001 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 NAB1Q13506 487 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 STARD3Q14849 445 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CCL14Q16627 93 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SLCO6A1Q86UG4 719 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TRIM48Q8IWZ4 208 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SVOPQ8N4V2 548 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 KCTD14Q9BQ13 255 aaPredicted RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TM6SF2Q9BZW4 377 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 HIPK3Q9H422 1215 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TLE6Q9H808 572 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 NOL11Q9H8H0 719 aaKnown RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 IGSF9Q9P2J2 1179 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 DNMT3LQ9UJW3 386 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 PADI4Q9UM07 663 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 FAM50BQ9Y247 325 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CLUHO75153 1309 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 PNMA8CA0A1B0GUJ8 204 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 FAM95CA0A1B0GW59 222 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 INPP4BO15327 924 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TUSC3Q13454 348 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 PSMD5Q16401 504 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 EML3Q32P44 896 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 NOL9Q5SY16 702 aaKnown RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CDH24Q86UP0 819 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 DSELQ8IZU8 1212 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 MARVELD2Q8N4S9 558 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 ACMSDQ8TDX5 336 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SLC25A23Q9BV35 468 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CDH19Q9H159 772 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 PIF1Q9H611 641 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 PTCH2Q9Y6C5 1203 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TRIM64CA6NLI5 447 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 IGSF6O95976 241 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 HDCP19113 662 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CRHR1P34998 444 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CLCNKBP51801 687 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 POU5F1Q01860 360 aaKnown RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 LDLRAP1Q5SW96 308 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 MON1BQ7L1V2 547 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 P3H2Q8IVL5 708 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CIB1Q99828 191 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 ZDHHC6Q9H6R6 413 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CAPN10Q9HC96 672 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SPAG4Q9NPE6 437 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TMEM161AQ9NX61 479 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 FAM32AQ9Y421 112 aaKnown RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 CCDC162PA2VCL2 907 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SYNCRIPO60506 623 aaKnown RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SPIRE1Q08AE8 756 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 POM121L1PQ3SYA9 428 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 GRIN3AQ8TCU5 1115 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 TFAP2BQ92481 460 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 LHX5Q9H2C1 402 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 SIX2Q9NPC8 291 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 RPRD1BQ9NQG5 326 aaKnown RBP13.2□□□□□ -0.3
TCOF1-213ENST00000514442 PCDHA2Q9Y5H9 948 aa13.2□□□□□ -0.3
TCOF1-213ENST00000514442 PSMD11O00231 422 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 CCNKO75909 580 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 STAU1O95793 577 aaKnown RBP13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PCNAP12004 261 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 FBXW4P57775 412 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 DMC1Q14565 340 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 CCDC85BQ15834 202 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PGS1Q32NB8 556 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 LCLAT1Q6UWP7 414 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ZFP28Q8NHY6 868 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 APOL4Q9BPW4 351 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ZYG11BQ9C0D3 744 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ACTR8Q9H981 624 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF221Q9UK13 617 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 DERAQ9Y315 318 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 KPNA3O00505 521 aaPredicted RBP13.19□□□□□ -0.3
TCOF1-213ENST00000514442 MDM4O15151 490 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 DDX5P17844 614 aaKnown RBP13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ATP6V1B2P21281 511 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 TKTP29401 623 aaKnown RBP13.19□□□□□ -0.3
TCOF1-213ENST00000514442 CLCN2P51788 898 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 NFYCQ13952 458 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 MOGQ16653 247 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 USP41Q3LFD5 358 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 SLC41A1Q8IVJ1 513 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 FBXO39Q8N4B4 442 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 BRI3BPQ8WY22 251 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 SERAC1Q96JX3 654 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 PCDHGA4Q9Y5G9 962 aa13.19□□□□□ -0.3
TCOF1-213ENST00000514442 ZNF536O15090 1300 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms