RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 EPS8L2Q9H6S3 715 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RBM12Q9NTZ6 932 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 NDUFAF1Q9Y375 327 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 HCN4Q9Y3Q4 1203 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 A0A0U1RQF3 1178 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CCDC154A6NI56 674 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TRAFD1O14545 582 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 MAN1A2O60476 641 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TIPRLO75663 272 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 HLA-DQA2P01906 255 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 POU1F1P28069 291 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RBL1P28749 1068 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TPP2P29144 1249 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 NUMBP49757 651 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 DEFA1P59665 94 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 DEFA3P59666 94 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 MTF1Q14872 753 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 CARD16Q5EG05 197 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ZNF621Q6ZSS3 439 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 P4HA3Q7Z4N8 544 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ULK2Q8IYT8 1036 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ATG16L2Q8NAA4 619 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 STYXQ8WUJ0 223 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ATG4AQ8WYN0 398 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 BTBD9Q96Q07 612 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 SLC12A4Q9UP95 1085 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RIPK3Q9Y572 518 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ACTL7BQ9Y614 415 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 COL14A1Q05707 1796 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 BCORL1Q5H9F3 1711 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 SLC31A1O15431 190 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 SCN2BO60939 215 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NR2F1P10589 423 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TFPIP10646 304 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 HOXB2P14652 356 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TIE1P35590 1138 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TNFSF9P41273 254 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NEK2P51955 445 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 IRF5Q13568 498 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 GPAT3Q53EU6 434 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 NIPAL1Q6NVV3 410 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 IRGCQ6NXR0 463 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 LRRC74BQ6ZQY2 392 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 TMEM26Q6ZUK4 368 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 UBE2R2Q712K3 238 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 DENND6AQ8IWF6 608 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ZSWIM2Q8NEG5 633 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ETNPPLQ8TBG4 499 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PTCD2Q8WV60 388 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 CYGBQ8WWM9 190 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 RAD51AP1Q96B01 352 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PHF21BQ96EK2 531 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ART5Q96L15 291 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 DPYSL5Q9BPU6 564 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 KCTD14Q9BQ13 255 aaPredicted RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 SRMSQ9H3Y6 488 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 ELAC1Q9H777 363 aaKnown RBP4.27□□□□□ -1.73
VCAN-209ENST00000513016 GLOD4Q9HC38 313 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 VPS4AQ9UN37 437 aa4.27□□□□□ -1.73
VCAN-209ENST00000513016 PRMT5O14744 637 aaPredicted RBP4.26□□□□□ -1.73
VCAN-209ENST00000513016 NPC1O15118 1278 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 SERPINB7O75635 380 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 STBD1O95210 358 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 ALPIP09923 528 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 CCNYL3P0C7X3 344 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 SNHG28P0DPA3 235 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 ALADP13716 330 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 ITGA2P17301 1181 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 HOXB6P17509 224 aaKnown RBP4.26□□□□□ -1.73
VCAN-209ENST00000513016 ADRA1BP35368 520 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 PLGLB1Q02325 96 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 CACNG1Q06432 222 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 DPYSL3Q14195 570 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 NR1D2Q14995 579 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 E2F4Q16254 413 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 CCL14Q16627 93 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 HYIQ5T013 277 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 RAD9BQ6WBX8 426 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 SLC36A4Q6YBV0 504 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 BNC2Q6ZN30 1099 aaPredicted RBP4.26□□□□□ -1.73
VCAN-209ENST00000513016 KIAA0895Q8NCT3 520 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 RNASE11Q8TAA1 199 aaKnown RBP4.26□□□□□ -1.73
VCAN-209ENST00000513016 CENPTQ96BT3 561 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 C19orf60Q96EN9 201 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 FBRSQ9HAH7 460 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 NECTIN3Q9NQS3 549 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 SAC3D1A6NKF1 404 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 MCIDASD6RGH6 385 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 H0Y858 1186 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 ZNF185O15231 689 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 STX11O75558 287 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 RECQL5O94762 991 aaPredicted RBP4.26□□□□□ -1.73
VCAN-209ENST00000513016 CHRNA1P02708 482 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 OR4Q2P0C623 313 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 LBPP18428 481 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 CLCNKBP51801 687 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 ITGB3BPQ13352 177 aaPredicted RBP4.26□□□□□ -1.73
VCAN-209ENST00000513016 AGKQ53H12 422 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 TAPT1Q6NXT6 567 aa4.26□□□□□ -1.73
VCAN-209ENST00000513016 IL27RAQ6UWB1 636 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms