RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 CSTF2P33240 577 aaKnown RBP eCLIP3.59□□□□□ -1.83
USP53-205ENST00000509769 FXR1P51114 621 aaKnown RBP eCLIP3.59□□□□□ -1.83
USP53-205ENST00000509769 TSPAN5P62079 268 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PRKCZQ05513 592 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GPS1Q13098 491 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 MAPK7Q13164 816 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CHI3L2Q15782 390 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CHRNA6Q15825 494 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SPDYE2Q495Y8 402 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CLVS2Q5SYC1 327 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 OTUD7BQ6GQQ9 843 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SULT6B1Q6IMI4 303 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TYW3Q6IPR3 259 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 NAPEPLDQ6IQ20 393 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GTF2H5Q6ZYL4 71 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 USP50Q70EL3 339 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 DHX30Q7L2E3 1194 aaKnown RBP eCLIP3.59□□□□□ -1.83
USP53-205ENST00000509769 P4HA3Q7Z4N8 544 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 FAM109AQ8N4B1 249 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 LINC00471Q8N535 108 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TTLL6Q8N841 843 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 C2orf69Q8N8R5 385 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 MFSD9Q8NBP5 474 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 OR10T2Q8NGX3 314 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 JPH3Q8WXH2 748 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 REPS1Q96D71 796 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ANAPC16Q96DE5 110 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 FAM120BQ96EK7 910 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 GFM1Q96RP9 751 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 ZNF347Q96SE7 839 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 EIF2AK1Q9BQI3 630 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 TMEM109Q9BVC6 243 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GDF3Q9NR23 364 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 EIF2B3Q9NR50 452 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 NRBP2Q9NSY0 501 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 LYRM2Q9NU23 88 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 C1orf109Q9NX04 203 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ACTR10Q9NZ32 417 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 KCND2Q9NZV8 630 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 KLQ9UEF7 1012 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CNOT8Q9UFF9 292 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 ZNF225Q9UK10 706 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 IKZF3Q9UKT9 509 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PRR12Q9ULL5 1215 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 INVSQ9Y283 1065 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 NCKAP1Q9Y2A7 1128 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SLC27A6Q9Y2P4 619 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PMF1-BGLAPU3KQ54 211 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SPACA6W5XKT8 324 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PRAMEF33A0A0G2JMD5 474 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 C17orf113A0A1B0GUU1 675 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 FAM149AA5PLN7 773 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ANKRD65E5RJM6 399 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TNFRSF10AO00220 468 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 UBDO15205 165 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SGCEO43556 437 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PRAMEF10O60809 474 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 MBP02144 154 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SERPIND1P05546 499 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CHRNGP07510 517 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 MYL3P08590 195 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 OR56A5P0C7T3 313 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ACADMP11310 421 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ANXA3P12429 323 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TNNI3P19429 210 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CD40LGP29965 261 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SERPINF1P36955 418 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 RPS19P39019 145 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 ZAP70P43403 619 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 BLOC1S1P78537 153 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 HTRA3P83110 453 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CHRNDQ07001 517 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 MAP4K2Q12851 820 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GK3PQ14409 553 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 KIZQ2M2Z5 673 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ASTE1Q2TB18 679 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 DPCR1Q3MIW9 517 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PERM1Q5SV97 790 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SYDE2Q5VT97 1194 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 C15orf52Q6ZUT6 534 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 KCTD1Q719H9 257 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 BEND5Q7L4P6 421 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ADGRG6Q86SQ4 1221 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ADIPOR2Q86V24 386 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 METTL23Q86XA0 190 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 IZUMO1Q8IYV9 350 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ZNF567Q8N184 647 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 PCDH19Q8TAB3 1148 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 CEP76Q8TAP6 659 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ACOT11Q8WXI4 607 aaPredicted RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 MR1Q95460 341 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 GTPBP3Q969Y2 492 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 RSPRY1Q96DX4 576 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ACSBG1Q96GR2 724 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 HSPA12BQ96MM6 686 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SECISBP2Q96T21 854 aaKnown RBP3.59□□□□□ -1.83
USP53-205ENST00000509769 DPYSL5Q9BPU6 564 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 SLC6A16Q9GZN6 736 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 ZNF350Q9GZX5 532 aa3.59□□□□□ -1.83
USP53-205ENST00000509769 TBC1D17Q9HA65 648 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms