RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 GOLGA6DP0CG33 693 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 BCKDHBP21953 392 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 FDFT1P37268 417 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 EPHB1P54762 984 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 C4orf22Q6V702 233 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 KLHDC8BQ8IXV7 354 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 PIH1D2Q8WWB5 315 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 ADGRE3Q9BY15 652 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 ETNK1Q9HBU6 452 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 GOLGA6AQ9NYA3 693 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 GGT7Q9UJ14 662 aa29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 ARIH1Q9Y4X5 557 aaPredicted RBP29.8■■■□□ 2.36
LIMCH1-211ENST00000509638 PRR23AA6NEV1 266 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 FAM47DPA6NHR8 397 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 PTGIRP43119 386 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 TNNT3P45378 269 aaPredicted RBP29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 RPL26P61254 145 aaKnown RBP29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 TCF15Q12870 199 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 GPS1Q13098 491 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 SYCP2LQ5T4T6 812 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 FICDQ9BVA6 458 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 PHTF1Q9UMS5 762 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 RPL26L1Q9UNX3 145 aaKnown RBP29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 FADS3Q9Y5Q0 445 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 THADAQ6YHU6 1953 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 LRRK1Q38SD2 2015 aa29.79■■■□□ 2.36
LIMCH1-211ENST00000509638 AREL1O15033 823 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 ITIH2P19823 946 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 GRIA4P48058 902 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 SUOXP51687 545 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 BASP1P80723 227 aaKnown RBP29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 OLIG2Q13516 323 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 SEMA5AQ13591 1074 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 ERAP2Q6P179 960 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 GPR174Q9BXC1 333 aa29.78■■■□□ 2.36
LIMCH1-211ENST00000509638 E7EVH7 732 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 NEMP1O14524 444 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 AP1G1O43747 822 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 NDUFS2O75306 463 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 NDST3O95803 873 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 CTPS1P17812 591 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 MMP12P39900 470 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 SEMG2Q02383 582 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 RPL6Q02878 288 aaKnown RBP29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 DHX34Q14147 1143 aaKnown RBP29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 KCTD11Q693B1 232 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 SLC36A4Q6YBV0 504 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 USP45Q70EL2 814 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 JAMLQ86YT9 394 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 PDCD7Q8N8D1 485 aaKnown RBP29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 OR2T34Q8NGX1 318 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 RMDN1Q96DB5 314 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 TRPM6Q9BX84 2022 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 LOC285095A0A1B0GVY8 99 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 LRRC72A6NJI9 287 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 TTI1O43156 1089 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 HRO43593 1189 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 AP2A1O95782 977 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 ALPIP09923 528 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 FAM193AP78312 1265 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 ELP6Q0PNE2 266 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 PTK6Q13882 451 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 SPARCL1Q14515 664 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 MNS1Q8NEH6 495 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 SMIM14Q96QK8 99 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 MCCC1Q96RQ3 725 aaPredicted RBP29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 APOL2Q9BQE5 337 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 LRRC40Q9H9A6 602 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 PREBQ9HCU5 417 aa29.77■■■□□ 2.36
LIMCH1-211ENST00000509638 A0A0J9YYE9 177 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 RIOK3O14730 519 aaKnown RBP29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 MAP3K13O43283 966 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 USP12O75317 370 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 AGTP01019 485 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 TRBC1P01850 177 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 APRTP07741 180 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 ATXN1LP0C7T5 689 aaKnown RBP29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 CNR2P34972 360 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 ADRA1AP35348 466 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 CHRNA4P43681 627 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 PTPRRQ15256 657 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 SLC1A5Q15758 541 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 QPCTQ16769 361 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 TBL1YQ9BQ87 522 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 KDM4CQ9H3R0 1056 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 C6orf106Q9H6K1 298 aaPredicted RBP29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 B4GALT6Q9UBX8 382 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 ASIC3Q9UHC3 531 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 R4GN57 208 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 MYLKQ15746 1914 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 DOCK9Q9BZ29 2069 aa29.76■■■□□ 2.35
LIMCH1-211ENST00000509638 FRYLO94915 3013 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3DA0A087WVF3 549 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3IA0A087WXS9 549 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3EA0A087X179 549 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3KA0A087X1G2 549 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3FA6NER0 549 aaPredicted RBP29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 CAPN8A6NHC0 703 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 ANKRD66B4E2M5 251 aa29.75■■■□□ 2.35
LIMCH1-211ENST00000509638 TBC1D3LB9A6J9 549 aa29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms