RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 MAGEB18Q96M61 343 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 FAM111AQ96PZ2 611 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 LRMDAQ9H2I8 198 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 RBM22Q9NW64 420 aaKnown RBP eCLIP8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 WDR70Q9NW82 654 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 SPATA7Q9P0W8 599 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 CLEC4EQ9ULY5 219 aa8.76□□□□□ -1.01
LIMCH1-209ENST00000509277 GSC2O15499 205 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CDH16O75309 829 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ATP5HO75947 161 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 SORBS2O94875 1100 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ARSAP15289 507 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 GDI1P31150 447 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 STT3AP46977 705 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 SOX9P48436 509 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 RXRGP48443 463 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF235Q14590 738 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 FSCBQ5H9T9 825 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 FAM78AQ5JUQ0 283 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 DUPD1Q68J44 220 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TANGO2Q6ICL3 276 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 NCCRP1Q6ZVX7 275 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 OTOP3Q7RTS5 596 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CLNKQ7Z7G1 428 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF554Q86TJ5 538 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 PRPF39Q86UA1 669 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 HEATR4Q86WZ0 1026 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 NPAS3Q8IXF0 933 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ICA1LQ8NDH6 482 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 IPMKQ8NFU5 416 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 RIN3Q8TB24 985 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 GRK7Q8WTQ7 553 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 NT5C3BQ969T7 300 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 P2RY11Q96G91 374 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 MYRFLQ96LU7 910 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ECSITQ9BQ95 431 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 BTBD10Q9BSF8 475 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TMEM120AQ9BXJ8 343 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 KLF16Q9BXK1 252 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 POMKQ9H5K3 350 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ZNF395Q9H8N7 513 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 PRDM6Q9NQX0 595 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ABCB8Q9NUT2 735 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TRNAU1APQ9NX07 287 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 HBS1LQ9Y450 684 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TTC28Q96AY4 2481 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 HEPACAM2A8MVW5 462 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ALADP13716 330 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ANPEPP15144 967 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ZFXP17010 805 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 BGNP21810 368 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 PMLP29590 882 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CRADDP78560 199 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 GAD2Q05329 585 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CDC16Q13042 620 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CCNG2Q16589 344 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 PDE12Q6L8Q7 609 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 DUS1LQ6P1R4 473 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ZCCHC23Q6ZST2 131 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TREML1Q86YW5 311 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 WFDC5Q8TCV5 224 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CENPTQ96BT3 561 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TRIM56Q9BRZ2 755 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 DRC3Q9H069 523 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 KLC2Q9H0B6 622 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ZFP14Q9HCL3 533 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ZDHHC7Q9NXF8 308 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 LIMD1Q9UGP4 676 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 MTCH2Q9Y6C9 303 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 HNRNPA1P09651 372 aaKnown RBP eCLIP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 PIRTP0C851 137 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TPH1P17752 444 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CD72P21854 359 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 PCYT1AP49585 367 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 PHEXP78562 749 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 FASTKD3Q14CZ7 662 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TCEAL1Q15170 157 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 NRF1Q16656 503 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 GALNTL6Q49A17 601 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ASRGL1Q7L266 308 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CDKL3Q8IVW4 592 aaPredicted RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 OR52K2Q8NGK3 314 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 SPATA22Q8NHS9 363 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 CYB5D2Q8WUJ1 264 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 HTR3CQ8WXA8 447 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TRMT2BQ96GJ1 504 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 SRPK1Q96SB4 655 aaKnown RBP8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TSSK1BQ9BXA7 367 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TNKS2Q9H2K2 1166 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 BRD9Q9H8M2 597 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TAS2R1Q9NYW7 299 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 TMCO1Q9UM00 188 aa8.75□□□□□ -1.01
LIMCH1-209ENST00000509277 ATP9BO43861 1147 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 GJB3O75712 270 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 ASLP04424 464 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 PSMB4P28070 264 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 CSKP41240 450 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 OXCT1P55809 520 aa8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 EFTUD2Q15029 972 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMCH1-209ENST00000509277 NOMO1Q15155 1222 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms