RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 FRMD7Q6ZUT3 714 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 RAPH1Q70E73 1250 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 KCNMB4Q86W47 210 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 ZNF781Q8N8C0 355 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 ZNF512Q96ME7 567 aaPredicted RBP11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 TUBGCP5Q96RT8 1024 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 IL12RB2Q99665 862 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 LBHD1Q9BQE6 289 aaPredicted RBP11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 SPATA16Q9BXB7 569 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 EBF3Q9H4W6 596 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 CEP290O15078 2479 aa11.11□□□□□ -0.63
SH3RF1-203ENST00000508685 DOCK4Q8N1I0 1966 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 IGLV3-10A0A075B6K4 115 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 LOC100653049A0A140TA62 436 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 CCDC78A2IDD5 438 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 J3KR12 359 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 KRT34O76011 436 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 ZCCHC18P0CG32 403 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 RAG1P15918 1043 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 SERPINB5P36952 375 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 HSPA13P48723 471 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 KPNA2P52292 529 aaKnown RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 POLE2P56282 527 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 CDH17Q12864 832 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 RFTN1Q14699 578 aaPredicted RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 SH2D4BQ5SQS7 431 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 OGFRL1Q5TC84 451 aaPredicted RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 SEL1L3Q68CR1 1132 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 NADSYN1Q6IA69 706 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 FAM43BQ6ZT52 329 aaPredicted RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 CCDC117Q8IWD4 279 aaPredicted RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 ATP6V0D2Q8N8Y2 350 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 AUTS2Q8WXX7 1259 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 AZIN2Q96A70 460 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 ZNF689Q96CS4 500 aaPredicted RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 MFSD3Q96ES6 412 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 DTNBP1Q96EV8 351 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 HMCESQ96FZ2 354 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 RPRD1AQ96P16 312 aaPredicted RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 GPR22Q99680 433 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 MCMBPQ9BTE3 642 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 TTLL2Q9BWV7 592 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 OXCT2Q9BYC2 517 aaPredicted RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 RC3H2Q9HBD1 1191 aaKnown RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 CHRAC1Q9NRG0 131 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 IPO11Q9UI26 975 aaKnown RBP11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 ADAMTS6Q9UKP5 1117 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 RAB26Q9ULW5 256 aa11.1□□□□□ -0.63
SH3RF1-203ENST00000508685 TRIM43BA6NCK2 446 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 WASH4PA8MWX3 477 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 CACNG3O60359 315 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 GJB5O95377 273 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 PEX11BO96011 259 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 SOD2P04179 222 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 RHOQP17081 205 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 PIK3R1P27986 724 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 CSRP3P50461 194 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 CHN2P52757 468 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 SLC12A1Q13621 1099 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 CYLC2Q14093 348 aaPredicted RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 TRIP10Q15642 601 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 RARS2Q5T160 578 aaKnown RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 KDELC2Q7Z4H8 507 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 CMC1Q7Z7K0 106 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 PLD6Q8N2A8 252 aaKnown RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 UMODL1-AS1Q8N2C9 162 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 IPMKQ8NFU5 416 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 ZNF461Q8TAF7 563 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 TRIM43Q96BQ3 446 aaPredicted RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 TMEM169Q96HH4 297 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 VPS39Q96JC1 886 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 LENG8Q96PV6 779 aaPredicted RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 GATA5Q9BWX5 397 aaPredicted RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 UBE2OQ9C0C9 1292 aaKnown RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 RHOJQ9H4E5 214 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 CYP4F11Q9HBI6 524 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 GLOD4Q9HC38 313 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 C20orf96Q9NUD7 363 aaPredicted RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 RBM22Q9NW64 420 aaKnown RBP eCLIP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 TMEM248Q9NWD8 314 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 AAR2Q9Y312 384 aaKnown RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 BACE2Q9Y5Z0 518 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 CHD9Q3L8U1 2897 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 LTBP2Q14767 1821 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 RNASEH1O60930 286 aaKnown RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 PDE5AO76074 875 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 ACRP10323 421 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 HMGA1P17096 107 aaKnown RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 GSTT1P30711 240 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 ARRB2P32121 409 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 PPARGP37231 505 aaPredicted RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 ALDH1A3P47895 512 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 TUFMP49411 452 aaKnown RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 RING1Q06587 406 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 BTG3Q14201 252 aaPredicted RBP11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 SLC9B1Q4ZJI4 515 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 SFT2D3Q587I9 215 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 HSP90AA5PQ58FG0 334 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 VWA5B1Q5TIE3 1220 aa11.09□□□□□ -0.63
SH3RF1-203ENST00000508685 FOXB2Q5VYV0 432 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms