RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 USP41Q3LFD5 358 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 SLC24A5Q71RS6 500 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 LPCAT2Q7L5N7 544 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 TMEM132CQ8N3T6 1108 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 WDTC1Q8N5D0 677 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ZBED3Q96IU2 234 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 HAPLN3Q96S86 360 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ADAM7Q9H2U9 754 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 WDR55Q9H6Y2 383 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ZMYM5Q9UJ78 669 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PSMD13Q9UNM6 376 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 CXorf49A8MYA2 514 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PPEF2O14830 753 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 CLOCKO15516 846 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 AMHP03971 560 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 YBEYP58557 167 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ACAP2Q15057 778 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PTPRNQ16849 979 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 GPRIN3Q6ZVF9 776 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 EID3Q8N140 333 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 PQLC3Q8N755 202 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 CNTD1Q8N815 330 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 HJURPQ8NCD3 748 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ITFG1Q8TB96 612 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 RNF145Q96MT1 663 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 MGAT4DA6NG13 374 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 NPHS1O60500 1241 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 GRIA3P42263 894 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ABL2P42684 1182 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 MPP1Q00013 466 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 VAC14Q08AM6 782 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 CSTF3Q12996 717 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ITGA7Q13683 1181 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ADCK2Q7Z695 626 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF557Q8N988 423 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 MCOLN3Q8TDD5 553 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 ACTRT2Q8TDY3 377 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 STARD8Q92502 1023 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 LENG1Q96BZ8 264 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 HAPLN2Q9GZV7 340 aa10.82□□□□□ -0.68
LIMCH1-205ENST00000503057 SYN3O14994 580 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 HNRNPCP07910 306 aaKnown RBP eCLIP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 HGFP14210 728 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 UQCRBP14927 111 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 GSCP56915 257 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 PAFAH1B3Q15102 231 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 SYPL2Q5VXT5 272 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 TIFABQ6ZNK6 161 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ADAMTSL2Q86TH1 951 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 PGAM4Q8N0Y7 254 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 EFCAB3Q8N7B9 438 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF781Q8N8C0 355 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 IRAK4Q9NWZ3 460 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 IGKV6-21A0A0C4DH24 114 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 TYROBPO43914 113 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 KDM1AO60341 852 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ZNF682O95780 498 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 SERPIND1P05546 499 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 NRLP54845 237 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 POLR2LP62875 67 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 FOLH1Q04609 750 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 LRRC74AQ0VAA2 488 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 GRB14Q14449 540 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ARL13AQ5H913 290 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 DSELQ8IZU8 1212 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 PQLC1Q8N2U9 271 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 DHRSXQ8N5I4 330 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 SPATA22Q8NHS9 363 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 CLPTM1LQ96KA5 538 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 KCNU1A8MYU2 1149 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 SPTLC1O15269 473 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 CLDN11O75508 207 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 CPSF4O95639 269 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 GAD2Q05329 585 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 CRY1Q16526 586 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 VWA5B1Q5TIE3 1220 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 RSPH1Q8WYR4 309 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 MPP4Q96JB8 637 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 PPP3R2Q96LZ3 170 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 FCRL5Q96RD9 977 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 AGAP2Q99490 1192 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 HOPXQ9BPY8 73 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 A0A087WXM4 84 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 E7ESA3 106 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 TBL1XO60907 577 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 PEX11AO75192 247 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 IFNA14P01570 189 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 MAPKAPK2P49137 400 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ATN1P54259 1190 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 CREMQ03060 361 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 DPYSQ14117 519 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 BTG3Q14201 252 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 NRF1Q16656 503 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 KHDC1Q4VXA5 237 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 TSTD2Q5T7W7 516 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 TTC7BQ86TV6 843 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ZCWPW1Q9H0M4 648 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 ASB8Q9H765 288 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 PIGVQ9NUD9 493 aa10.81□□□□□ -0.68
LIMCH1-205ENST00000503057 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms