RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 INHAP05111 366 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 EPORP19235 508 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 TALDO1P37837 337 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 IFI35P80217 286 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-215ENST00000496447 BMT2Q1RMZ1 405 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 HIST3H2AQ7L7L0 130 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 POLNQ7Z5Q5 900 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 C12orf50Q8NA57 414 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-215ENST00000496447 HIST1H2ACQ93077 130 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 RNFT2Q96EX2 444 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 MYLK2Q9H1R3 596 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 TMEM216Q9P0N5 145 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 PCDHA2Q9Y5H9 948 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 TAF4O00268 1085 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 PEX1O43933 1283 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 CCNE2O96020 404 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 ANXA6P08133 673 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 TFEBP19484 476 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 RPL7AP62424 266 aaKnown RBP13.21□□□□□ -0.29
PTPRF-215ENST00000496447 SLC25A52Q3SY17 297 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 PSRC1Q6PGN9 363 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-215ENST00000496447 SCAIQ8N9R8 606 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 HDAC7Q8WUI4 952 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 LRRN4Q8WUT4 740 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 MRPS26Q9BYN8 205 aaKnown RBP13.21□□□□□ -0.29
PTPRF-215ENST00000496447 GPN3Q9UHW5 284 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-215ENST00000496447 MYRFQ9Y2G1 1151 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 AP3M1Q9Y2T2 418 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 MROH1Q8NDA8 1641 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 CORO1AP31146 461 aaKnown RBP13.21□□□□□ -0.29
PTPRF-215ENST00000496447 MC4RP32245 332 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 TTKP33981 857 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 KLHL5Q96PQ7 755 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 C1orf50Q9BV19 199 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 VPS45Q9NRW7 570 aa13.21□□□□□ -0.29
PTPRF-215ENST00000496447 UNC5CO95185 931 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 NTRK1P04629 796 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 ITGAVP06756 1048 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 ATP5F1P24539 256 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 TRIM25Q14258 630 aaKnown RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 INTS11Q5TA45 600 aaKnown RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 ADAMTSL2Q86TH1 951 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 IFNLR1Q8IU57 520 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 NPAS4Q8IUM7 802 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 CLVS1Q8IUQ0 354 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 MREGQ8N565 214 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 BSNDQ8WZ55 320 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 TMEM79Q9BSE2 394 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 HMG20AQ9NP66 347 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 HECAQ9UBI9 543 aaPredicted RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 BAZ2BQ9UIF8 2168 aaKnown RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 hCG_1818297A0A087WSY0 165 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 B4GALT4O60513 344 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 ULK1O75385 1050 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 HLA-DQA2P01906 255 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 RPL5P46777 297 aaKnown RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 POLD2P49005 469 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 BLMHQ13867 455 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 ALG11Q2TAA5 492 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 ARMCX4Q5H9R4 360 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 KLHL35Q6PF15 583 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 CYP2R1Q6VVX0 501 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 RNF44Q7L0R7 432 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 RNF148Q8N7C7 305 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 OR4L1Q8NH43 312 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 APOL4Q9BPW4 351 aa13.21□□□□□ -0.3
PTPRF-215ENST00000496447 NOL6Q9H6R4 1146 aaKnown RBP13.21□□□□□ -0.3
PTPRF-215ENST00000496447 FAM25AB3EWG3 89 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 FAM25CB3EWG5 89 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 FAM25GB3EWG6 89 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 H0Y858 1186 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 FESP07332 822 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 GSCP56915 257 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 SAMD4BQ5PRF9 694 aaKnown RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 BBS12Q6ZW61 710 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 PARGQ86W56 976 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.2□□□□□ -0.31e-11■■□□□ 13.6
PTPRF-215ENST00000496447 RBFAQ8N0V3 343 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 RIBC2Q9H4K1 309 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 LRRC10BA6NIK2 292 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 MAGEA10P43363 369 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 NAA20P61599 178 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 ECM1Q16610 540 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 SNAP47Q5SQN1 464 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 NEK10Q6ZWH5 1172 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 TSEN2Q8NCE0 465 aaKnown RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 GPR156Q8NFN8 814 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 GULP1Q9UBP9 304 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 TRIM24O15164 1050 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 SMPD1P17405 629 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 PSMB9P28065 219 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 PSMD8P48556 350 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 PRMT2P55345 433 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 RAB10P61026 200 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 AP5B1Q2VPB7 878 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 BHLHB9Q6PI77 547 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 FAM43BQ6ZT52 329 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 CDH24Q86UP0 819 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 STK32CQ86UX6 486 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 RASAL3Q86YV0 1011 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms