RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 VPS45Q9NRW7 570 aa11.28□□□□□ -0.6
CHMP3-209ENST00000494623 TMEM88BA6NKF7 163 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TRPC5OSA6NMA1 111 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 STX16-NPEPL1H3BU86 382 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 INPPL1O15357 1258 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 RAMP2O60895 175 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 SLC4A1P02730 911 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 ZCCHC18P0CG32 403 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TSPAN8P19075 237 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 OR1E1P30953 314 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 CLCN5P51795 746 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 ACLYP53396 1101 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 ATXN3P54252 364 aaPredicted RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 SFT2D3Q587I9 215 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TECRLQ5HYJ1 363 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 FAM219BQ5XKK7 198 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 KLC3Q6P597 504 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 CILP2Q8IUL8 1156 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 ARRDC2Q8TBH0 407 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 SH3RF2Q8TEC5 729 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 MYEOVQ96EZ4 313 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TBATAQ96M53 351 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 SERPINI1Q99574 410 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 SEMA3CQ99985 751 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 ZBTB26Q9HCK0 441 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 FNIP2Q9P278 1114 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 MARCH4Q9P2E8 410 aaPredicted RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 MTF2Q9Y483 593 aaPredicted RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TLL2Q9Y6L7 1015 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 MYLKQ15746 1914 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 A8MT66 165 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 SDHDO14521 159 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 KIF1CO43896 1103 aaKnown RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 IPO13O94829 963 aaKnown RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 PEX2P28328 305 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 CDKN2DP55273 166 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 DNAJB13P59910 316 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 PFKPQ01813 784 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TRIP4Q15650 581 aaPredicted RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 GPR158Q5T848 1215 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TMEM207Q6UWW9 146 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 BNC2Q6ZN30 1099 aaPredicted RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 KBTBD6Q86V97 674 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 CFAP52Q8N1V2 620 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 RYBPQ8N488 228 aaPredicted RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 CEP70Q8NHQ1 597 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 BLOC1S5Q8TDH9 187 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 IFT43Q96FT9 208 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TSPAN17Q96FV3 270 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 RANBP9Q96S59 729 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 GPR62Q9BZJ7 368 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 KLHL4Q9C0H6 718 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 ZNF385DQ9H6B1 395 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 ALG9Q9H6U8 611 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 EFCAB1Q9HAE3 211 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 TNFRSF12AQ9NP84 129 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.27□□□□□ -0.61
CHMP3-209ENST00000494623 STK39Q9UEW8 545 aa11.27□□□□□ -0.61
CHMP3-209ENST00000494623 S1PR4O95977 384 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 RBP1P09455 135 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 PIRTP0C851 137 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 KCNC1P48547 511 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 THOP1P52888 689 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 SULT2A1Q06520 285 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 RNF180Q86T96 592 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 SETD3Q86TU7 594 aaPredicted RBP11.26□□□□□ -0.61
CHMP3-209ENST00000494623 PIM3Q86V86 326 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 PDSS2Q86YH6 399 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 TEX26Q8N6G2 289 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 GIPC2Q8TF65 315 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 TMA16Q96EY4 203 aaKnown RBP11.26□□□□□ -0.61
CHMP3-209ENST00000494623 TLR8Q9NR97 1041 aaKnown RBP11.26□□□□□ -0.61
CHMP3-209ENST00000494623 RNF186Q9NXI6 227 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 PRPF19Q9UMS4 504 aaKnown RBP11.26□□□□□ -0.61
CHMP3-209ENST00000494623 MROH6A6NGR9 719 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 H3BNX3 289 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 SLC7A4O43246 635 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 XRCC1P18887 633 aaPredicted RBP11.26□□□□□ -0.61
CHMP3-209ENST00000494623 PEX19P40855 299 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 FAM189BP81408 668 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 ACAP2Q15057 778 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 MAP3K21Q5TCX8 1036 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 RNF220Q5VTB9 566 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 GK5Q6ZS86 529 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 CUZD1Q86UP6 607 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 PPP2R3CQ969Q6 453 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 CRISPLD1Q9H336 500 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 MFSD1Q9H3U5 465 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 CCSER2Q9H7U1 834 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 WDR41Q9HAD4 459 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 EML4Q9HC35 981 aaKnown RBP11.26□□□□□ -0.61
CHMP3-209ENST00000494623 ABT1Q9ULW3 272 aaKnown RBP11.26□□□□□ -0.61
CHMP3-209ENST00000494623 ACTL7AQ9Y615 435 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 ARL5AQ9Y689 179 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 SQORQ9Y6N5 450 aa11.26□□□□□ -0.61
CHMP3-209ENST00000494623 MYO16Q9Y6X6 1858 aa11.25□□□□□ -0.61
CHMP3-209ENST00000494623 IGLV3-10A0A075B6K4 115 aa11.25□□□□□ -0.61
CHMP3-209ENST00000494623 LOC285095A0A1B0GVY8 99 aa11.25□□□□□ -0.61
CHMP3-209ENST00000494623 DRGXA6NNA5 263 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms