RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 HOXA9P31269 272 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 CASP14P31944 242 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 IDUAP35475 653 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 SOX11P35716 441 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 MAGEA11P43364 429 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 GPR15P49685 360 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 COPB1P53618 953 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 YWHAEP62258 255 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 FANCCQ00597 558 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 ECT2LQ008S8 904 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 OCA2Q04671 838 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 PLD1Q13393 1074 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 LSM12Q3MHD2 195 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 TTMPQ5BVD1 217 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 ATAT1Q5SQI0 421 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 GJB7Q6PEY0 223 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 PLEKHM3Q6ZWE6 761 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 GRASPQ7Z6J2 395 aaPredicted RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 UNC93AQ86WB7 457 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 RIBC1Q8N443 379 aaPredicted RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 DNAAF3Q8N9W5 541 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 LHFPL5Q8TAF8 219 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 GPR152Q8TDT2 470 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 POMKQ9H5K3 350 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 LRRC19Q9H756 370 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 TBC1D23Q9NUY8 699 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 HCFC1R1Q9NWW0 138 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 EXTL2Q9UBQ6 330 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 TCF20Q9UGU0 1960 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 PCP4L1A6NKN8 68 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 UBXN8O00124 270 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 SNAPINO95295 136 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 LYNP07948 512 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 OCM2P0CE71 109 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 OCMP0CE72 109 aaPredicted RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 PON1P27169 355 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 EPHB3P54753 998 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 NTHL1P78549 312 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 CDC16Q13042 620 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 VEPH1Q14D04 833 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 SMAD2Q15796 467 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 SDHAF4Q5VUM1 108 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 TMEM270Q6UE05 265 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 TOGARAM2Q6ZUX3 1019 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 DCP2Q8IU60 420 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 C12orf29Q8N999 325 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 AENQ8WTP8 325 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 TRIM63Q969Q1 353 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 TRMT2BQ96GJ1 504 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 ZC3H10Q96K80 434 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 CFAP57Q96MR6 1250 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 MLPHQ9BV36 600 aaPredicted RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 ZNF518BQ9C0D4 1074 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 ELOVL4Q9GZR5 314 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 KLHL25Q9H0H3 589 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 UBE2TQ9NPD8 197 aaPredicted RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 APEX2Q9UBZ4 518 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 LIMA1Q9UHB6 759 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 NUP50Q9UKX7 468 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 CHTOPQ9Y3Y2 248 aaKnown RBP11.7□□□□□ -0.54
BRCA1-222ENST00000493919 CLUHO75153 1309 aa11.7□□□□□ -0.54
BRCA1-222ENST00000493919 PTPRDP23468 1912 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 SIGLEC16A6NMB1 481 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 H0Y858 1186 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 SHOXO15266 292 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 HAPLN1P10915 354 aaPredicted RBP11.69□□□□□ -0.54
BRCA1-222ENST00000493919 KRT5P13647 590 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 ADORA2BP29275 332 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 GRIK1P39086 918 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 EEF1A1P68104 462 aaKnown RBP11.69□□□□□ -0.54
BRCA1-222ENST00000493919 GCNT1Q02742 428 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 EEF1A2Q05639 463 aaKnown RBP11.69□□□□□ -0.54
BRCA1-222ENST00000493919 DDR2Q16832 855 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 ARHGAP44Q17R89 818 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 WASHC2DQ5SRD0 308 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 EEF1A1P5Q5VTE0 462 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 GTF2IRD2BQ6EKJ0 949 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 XKR5Q6UX68 686 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 CCNI2Q6ZMN8 369 aaPredicted RBP11.69□□□□□ -0.54
BRCA1-222ENST00000493919 GTF2IRD2Q86UP8 949 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 FAM35AQ86V20 835 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 P3H2Q8IVL5 708 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 TERB1Q8NA31 727 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 SLC4A11Q8NBS3 891 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 FBXO30Q8TB52 745 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 SLC2A14Q8TDB8 520 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 SUSD6Q92537 303 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 FUBP3Q96I24 572 aaKnown RBP eCLIP11.69□□□□□ -0.54
BRCA1-222ENST00000493919 PCMTD1Q96MG8 357 aaPredicted RBP11.69□□□□□ -0.54
BRCA1-222ENST00000493919 TMEM68Q96MH6 324 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 NECTIN4Q96NY8 510 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 PANX2Q96RD6 677 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 HERPUD2Q9BSE4 406 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 LSM14BQ9BX40 385 aaKnown RBP11.69□□□□□ -0.54
BRCA1-222ENST00000493919 CLPBQ9H078 707 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 CEP72Q9P209 647 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 FAM8A1Q9UBU6 413 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 ARHGAP26Q9UNA1 814 aa11.69□□□□□ -0.54
BRCA1-222ENST00000493919 ATP8B3O60423 1300 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms