RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 FAM172BPA6NC97 362 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 HSPB2A8KAH6 182 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 P2RY10O00398 339 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 KLK8O60259 260 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 ATP2C2O75185 946 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 NDUFB4O95168 129 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 CRYAAP02489 173 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 CNPP09543 421 aaKnown RBP3.09□□□□□ -1.91
CPSF3-205ENST00000489629 PTPN2P17706 415 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 MCM3P25205 808 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 HNRNPH1P31943 449 aaKnown RBP3.09□□□□□ -1.91
CPSF3-205ENST00000489629 FUT6P51993 359 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 HDAC4P56524 1084 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 DMP1Q13316 513 aaPredicted RBP3.09□□□□□ -1.91
CPSF3-205ENST00000489629 KRT72Q14CN4 511 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 HSPB2Q16082 182 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 ATP13A5Q4VNC0 1218 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 PPP6R3Q5H9R7 873 aaPredicted RBP3.09□□□□□ -1.91
CPSF3-205ENST00000489629 PAPPA-AS1Q5QFB9 102 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 MOB3CQ70IA8 216 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 LURAP1LQ8IV03 231 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 HERC6Q8IVU3 1022 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 CPXM2Q8N436 756 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 TMEM57Q8N5G2 664 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 PARP16Q8N5Y8 322 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 VPS37AQ8NEZ2 397 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 USP13Q92995 863 aaPredicted RBP3.09□□□□□ -1.91
CPSF3-205ENST00000489629 ERGIC1Q969X5 290 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 TTC14Q96N46 770 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 TWNKQ96RR1 684 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 STN1Q9H668 368 aaKnown RBP3.09□□□□□ -1.91
CPSF3-205ENST00000489629 PTPRHQ9HD43 1115 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 CDC14AQ9UNH5 594 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 GAB2Q9UQC2 676 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 GDAQ9Y2T3 454 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 PCDHGB5Q9Y5G0 923 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 A3GALT2U3KPV4 340 aa3.09□□□□□ -1.91
CPSF3-205ENST00000489629 SNED1Q8TER0 1413 aa3.09□□□□□ -1.92
CPSF3-205ENST00000489629 A0A0G2JPF8 293 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 ARHGAP10A1A4S6 786 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 PABPN1LA6NDY0 278 aaKnown RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 SH2D7A6NKC9 451 aaPredicted RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 KRTAP9-6A8MVA2 160 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 HNRNPCL3B7ZW38 293 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 PER2O15055 1255 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 PLRG1O43660 514 aaKnown RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 CEP104O60308 925 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 HNRNPCL1O60812 293 aaKnown RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 RFPL2O75678 378 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 HNRNPCL4P0DMR1 293 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 RXRAP19793 462 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 KCNA5P22460 613 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 CHATP28329 748 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 TIMP3P35625 211 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 NR1H2P55055 460 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 PHEXP78562 749 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 PRKG1Q13976 671 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 SYT16Q17RD7 645 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 EDRF1Q3B7T1 1238 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 ACCSLQ4AC99 568 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 CES5AQ6NT32 575 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 FAM122CQ6P4D5 195 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 TRMT1LQ7Z2T5 733 aaKnown RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 SFR1Q86XK3 245 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 KLHDC8BQ8IXV7 354 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 FTSJ3Q8IY81 847 aaKnown RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 GJC3Q8NFK1 279 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 CNOT9Q92600 299 aaKnown RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 TAF15Q92804 592 aaKnown RBP eCLIP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 OTULINQ96BN8 352 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 TMEM19Q96HH6 336 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 KLHL1Q9NR64 748 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 ZFP57Q9NU63 452 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 C1RLQ9NZP8 487 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 VDAC3Q9Y277 283 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 RIPOR2Q9Y4F9 1068 aa3.08□□□□□ -1.92
CPSF3-205ENST00000489629 ATXN2Q99700 1313 aaKnown RBP3.08□□□□□ -1.92
CPSF3-205ENST00000489629 TAF1P21675 1872 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 VWA3AA6NCI4 1184 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 SOCS6O14544 535 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 ANP32CO43423 234 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 TIPRLO75663 272 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 GPTP24298 496 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 MARK3P27448 753 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 CHKAP35790 457 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 CLDN2P57739 230 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 SLC20A2Q08357 652 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 ARHGEF6Q15052 776 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 TBC1D26Q86UD7 250 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 FOXRED2Q8IWF2 684 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 SUGP1Q8IWZ8 645 aaKnown RBP3.07□□□□□ -1.92
CPSF3-205ENST00000489629 MYCT1Q8N699 235 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 CEP70Q8NHQ1 597 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 LRRC8CQ8TDW0 803 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 PAGR1Q9BTK6 254 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 TRMT61BQ9BVS5 477 aaKnown RBP3.07□□□□□ -1.92
CPSF3-205ENST00000489629 C1QTNF5Q9BXJ0 243 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 SLC32A1Q9H598 525 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 EPHX3Q9H6B9 360 aa3.07□□□□□ -1.92
CPSF3-205ENST00000489629 FBRSL1Q9HCM7 1045 aaKnown RBP3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms