RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TIFABQ6ZNK6 161 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 ZNF771Q7L3S4 317 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 KDELC2Q7Z4H8 507 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 KCNMB4Q86W47 210 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SLC25A41Q8N5S1 370 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 ZNF557Q8N988 423 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 MGARPQ8TDB4 240 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 APOPT1Q96IL0 206 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 ZNF317Q96PQ6 595 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 TREX1Q9NSU2 369 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 MKS1Q9NXB0 559 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 IL1RAPL1Q9NZN1 696 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 VPS51Q9UID3 782 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 GGA2Q9UJY4 613 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SCN8AQ9UQD0 1980 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 HEATR9A2RTY3 570 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 TM9SF1O15321 606 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 TMCC1O94876 653 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 ASMTLO95671 621 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 FAM107AO95990 144 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 FGF1P05230 155 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 CISD3P0C7P0 127 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 PABPC1P11940 636 aaKnown RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 RPA3P35244 121 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 OPRD1P41143 372 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SOX9P48436 509 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 CDK18Q07002 472 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 SLC12A1Q13621 1099 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 BMPR2Q13873 1038 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 GEN1Q17RS7 908 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 FUT11Q495W5 492 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 PITRM1Q5JRX3 1037 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 TEDDM1Q5T9Z0 273 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 KIAA0930Q6ICG6 404 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.3□□□□□ -0.12
CUX1-209ENST00000487284 BCAS4Q8TDM0 211 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 CSGALNACT1Q8TDX6 532 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 CKAP2Q8WWK9 683 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 NUDCD1Q96RS6 583 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 TRIB3Q96RU7 358 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 KLF6Q99612 283 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 NOD2Q9HC29 1040 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 C20orf96Q9NUD7 363 aaPredicted RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 LHX3Q9UBR4 397 aa14.3□□□□□ -0.12
CUX1-209ENST00000487284 ZNF106Q9H2Y7 1883 aaKnown RBP14.3□□□□□ -0.12
CUX1-209ENST00000487284 GOLGA8RI6L899 631 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 INSIG1O15503 277 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 NARSO43776 548 aaKnown RBP14.29□□□□□ -0.12
CUX1-209ENST00000487284 PAPSS2O95340 614 aaPredicted RBP14.29□□□□□ -0.12
CUX1-209ENST00000487284 PYGBP11216 843 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 NEK3P51956 506 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 PLK1P53350 603 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 ZP2Q05996 745 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 KDSRQ06136 332 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 HSP90AA5PQ58FG0 334 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 GRTP1Q5TC63 336 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 TMEM215Q68D42 235 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 LINGO4Q6UY18 593 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 KIAA0907Q7Z7F0 614 aaPredicted RBP14.29□□□□□ -0.12
CUX1-209ENST00000487284 ADHFE1Q8IWW8 467 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 DYDC1Q8WWB3 177 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 ACDQ96AP0 544 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 IFT43Q96FT9 208 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 CHMP6Q96FZ7 201 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 NSMCE3Q96MG7 304 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 CCT8L2Q96SF2 557 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 RBBP8Q99708 897 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 MCMBPQ9BTE3 642 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 C2orf49Q9BVC5 232 aaPredicted RBP14.29□□□□□ -0.12
CUX1-209ENST00000487284 MLXIPLQ9NP71 852 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 NSMCE4AQ9NXX6 385 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 TXNDC16Q9P2K2 825 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 DEC1Q9P2X7 70 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 SLC27A6Q9Y2P4 619 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 TCF20Q9UGU0 1960 aaKnown RBP14.29□□□□□ -0.12
CUX1-209ENST00000487284 TRIOO75962 3097 aa14.29□□□□□ -0.12
CUX1-209ENST00000487284 F5P12259 2224 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 CXorf51AA0A1B0GTR3 108 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 SIN3BO75182 1162 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 NDST3O95803 873 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 ITGA2BP08514 1039 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 PAMP19021 973 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 ARNTP27540 789 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 ARCN1P48444 511 aaKnown RBP14.28□□□□□ -0.12
CUX1-209ENST00000487284 LIMK2P53671 638 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 CSE1LP55060 971 aaKnown RBP14.28□□□□□ -0.12
CUX1-209ENST00000487284 IL9RQ01113 521 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 DMTNQ08495 405 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 NSUN2Q08J23 767 aaKnown RBP eCLIP14.28□□□□□ -0.12
CUX1-209ENST00000487284 SEPT6Q14141 434 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 RALGPS1Q5JS13 557 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 TSTD2Q5T7W7 516 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 MROH9Q5TGP6 573 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 GRAMD4Q6IC98 578 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 ESRP1Q6NXG1 681 aaKnown RBP14.28□□□□□ -0.12
CUX1-209ENST00000487284 ADIPOR2Q86V24 386 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 CNTN4Q8IWV2 1026 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 AHI1Q8N157 1196 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 PHTF2Q8N3S3 785 aa14.28□□□□□ -0.12
CUX1-209ENST00000487284 ACMSDQ8TDX5 336 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms