RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SLC12A1Q13621 1099 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 RUNX2Q13950 521 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 ARHGEF6Q15052 776 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 FBXO47Q5MNV8 452 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 KLHL24Q6TFL4 600 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 B3GNT6Q6ZMB0 384 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 TBC1D26Q86UD7 250 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 KIAA2013Q8IYS2 634 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 PLD5Q8N7P1 536 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 KBTBD3Q8NAB2 608 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 CREB3L4Q8TEY5 395 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 SNAPC3Q92966 411 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 ELP4Q96EB1 424 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 LBHD1Q9BQE6 289 aaPredicted RBP3.29□□□□□ -1.88
VPS50-216ENST00000484954 DDX4Q9NQI0 724 aaKnown RBP3.29□□□□□ -1.88
VPS50-216ENST00000484954 CISD1Q9NZ45 108 aaKnown RBP3.29□□□□□ -1.88
VPS50-216ENST00000484954 PEMTQ9UBM1 199 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 SLCO3A1Q9UIG8 710 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 KCNS2Q9ULS6 477 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 CDC14AQ9UNH5 594 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 GPR52Q9Y2T5 361 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 PAM16Q9Y3D7 125 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 PSAT1Q9Y617 370 aa3.29□□□□□ -1.88
VPS50-216ENST00000484954 HNRNPCL2B2RXH8 293 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 ZNF587BE7ETH6 402 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 PEX5P50542 639 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 BLKP51451 505 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 CCR5P51681 352 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 NLRP5P59047 1200 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 POU3F1Q03052 451 aaPredicted RBP3.28□□□□□ -1.88
VPS50-216ENST00000484954 ZNF155Q12901 538 aaPredicted RBP3.28□□□□□ -1.88
VPS50-216ENST00000484954 GRIK3Q13003 919 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 ZBTB17Q13105 803 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 ANKRD1Q15327 319 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 CALCRLQ16602 461 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 MMEL1Q495T6 779 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 HIST2H2BCQ6DN03 193 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 HIST2H2BDQ6DRA6 164 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 LDHAL6AQ6ZMR3 332 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 C9orf139Q6ZV77 190 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 FAM160B2Q86V87 743 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 SATL1Q86VE3 508 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 CPOQ8IVL8 374 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 NAGSQ8N159 534 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 CIARTQ8N365 385 aaPredicted RBP3.28□□□□□ -1.88
VPS50-216ENST00000484954 RND1Q92730 232 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 C3orf30Q96M34 536 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 TAOK3Q9H2K8 898 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 SNTG1Q9NSN8 517 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 ALKBH4Q9NXW9 302 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 HSF4Q9ULV5 492 aa3.28□□□□□ -1.88
VPS50-216ENST00000484954 IGHV4OR15-8A0A075B7B6 117 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 SOCS6O14544 535 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 WNT9BO14905 357 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 MID1O15344 667 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 LMX1BO60663 402 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 SLC2A4P14672 509 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 ZNF8P17098 575 aaPredicted RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 DGKAP23743 735 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 HNRNPH1P31943 449 aaKnown RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 PAPOLAP51003 745 aaKnown RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 NR1H2P55055 460 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 BIRC2Q13490 618 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 OASLQ15646 514 aaKnown RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 ANKRD54Q6NXT1 300 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 TUBA1AQ71U36 451 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 ADGRG6Q86SQ4 1221 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 GPAT4Q86UL3 456 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 FOXP4Q8IVH2 680 aaPredicted RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 FOXRED2Q8IWF2 684 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 SECTM1Q8WVN6 248 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 SH3KBP1Q96B97 665 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 MTBPQ96DY7 904 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 ZC3HAV1LQ96H79 300 aaKnown RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 ZNF385AQ96PM9 386 aaKnown RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 OR1F2PQ96R84 312 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 CD180Q99467 661 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 TUBA1CQ9BQE3 449 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 MXRA8Q9BRK3 442 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 PYM1Q9BRP8 204 aaKnown RBP3.27□□□□□ -1.89
VPS50-216ENST00000484954 HEMGNQ9BXL5 484 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 UBTD1Q9HAC8 227 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 SMARCAL1Q9NZC9 954 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 TINAGQ9UJW2 476 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 SUFUQ9UMX1 484 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 NFE2L3Q9Y4A8 694 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 PCDHAC2Q9Y5I4 1007 aa3.27□□□□□ -1.89
VPS50-216ENST00000484954 PRR23AA6NEV1 266 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 PRSS47A8MTI9 375 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 PEX14O75381 377 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 URODP06132 367 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 SP1P08047 785 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 PTPN2P17706 415 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 EIF2S3P41091 472 aaKnown RBP3.26□□□□□ -1.89
VPS50-216ENST00000484954 ZNF132P52740 706 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 ACSM2AQ08AH3 577 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 TBL3Q12788 808 aaKnown RBP3.26□□□□□ -1.89
VPS50-216ENST00000484954 OS9Q13438 667 aaPredicted RBP3.26□□□□□ -1.89
VPS50-216ENST00000484954 GRAMD1BQ3KR37 738 aa3.26□□□□□ -1.89
VPS50-216ENST00000484954 AMZ1Q400G9 498 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms