RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 RANBP10Q6VN20 620 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 ERN2Q76MJ5 926 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 PARS2Q7L3T8 475 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 ZSWIM9Q86XI8 627 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 NDUFAF2Q8N183 169 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 CAMKK1Q8N5S9 505 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 AADATQ8N5Z0 425 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 TMEM105Q8N8V8 129 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 NAT8LQ8N9F0 302 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 OMDQ99983 421 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 HDAC8Q9BY41 377 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 FBXL12Q9NXK8 326 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 SCML1Q9UN30 329 aa12.32□□□□□ -0.44
SDC1-206ENST00000482879 RPL26L1Q9UNX3 145 aaKnown RBP12.32□□□□□ -0.44
SDC1-206ENST00000482879 ESYT3A0FGR9 886 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 FAM86C2PA6NEL3 165 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 UPK3BL1B0FP48 263 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 ANKRD66B4E2M5 251 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 UPK3BL2E5RIL1 263 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 GOLGA8MH3BSY2 632 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 LAMTOR5O43504 91 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 RNASEH2AO75792 299 aaKnown RBP12.31□□□□□ -0.44
SDC1-206ENST00000482879 TMEM63AO94886 807 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 PAPSS2O95340 614 aaPredicted RBP12.31□□□□□ -0.44
SDC1-206ENST00000482879 PRKCGP05129 697 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 FGF1P05230 155 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 ATXN1LP0C7T5 689 aaKnown RBP12.31□□□□□ -0.44
SDC1-206ENST00000482879 C7P10643 843 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 CTPS1P17812 591 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 DRD3P35462 400 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 P2RY2P41231 377 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 GRIA1P42261 906 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 NEK3P51956 506 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 MORF4L2Q15014 288 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 UGP2Q16851 508 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 LRRC73Q5JTD7 316 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 DENND5AQ6IQ26 1287 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 HIBCHQ6NVY1 386 aaPredicted RBP12.31□□□□□ -0.44
SDC1-206ENST00000482879 HOOK3Q86VS8 718 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 DNAAF3Q8N9W5 541 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 DTWD2Q8NBA8 298 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 MCUQ8NE86 351 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 MDGA1Q8NFP4 955 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 OR52K1Q8NGK4 314 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 SEC14L1Q92503 715 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 UBXN4Q92575 508 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 NEUROG2Q9H2A3 272 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 ARNT2Q9HBZ2 717 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 FAM114A2Q9NRY5 505 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 PIH1D1Q9NWS0 290 aaKnown RBP12.31□□□□□ -0.44
SDC1-206ENST00000482879 GRHL1Q9NZI5 618 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 NCKAP1Q9Y2A7 1128 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 LRRK1Q38SD2 2015 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 MYLKQ15746 1914 aa12.31□□□□□ -0.44
SDC1-206ENST00000482879 EML5Q05BV3 1969 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 BHMG1C9JSJ3 638 aaPredicted RBP12.3□□□□□ -0.44
SDC1-206ENST00000482879 K7ESF4 209 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 SMAPO00193 183 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 SLC34A2O95436 690 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 ALPIP09923 528 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 ADRB3P13945 408 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 TPH1P17752 444 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 NFKBIAP25963 317 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 AVPR2P30518 371 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 ABL2P42684 1182 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 GRIA4P48058 902 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 PXNP49023 591 aaPredicted RBP12.3□□□□□ -0.44
SDC1-206ENST00000482879 SUOXP51687 545 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 PLTPP55058 493 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 FAM193AP78312 1265 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 CDH17Q12864 832 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 PIP5KL1Q5T9C9 394 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 ERAP2Q6P179 960 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 LRRC8BQ6P9F7 803 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 USP30Q70CQ3 517 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 USP45Q70EL2 814 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 FAM124AQ86V42 546 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 KBTBD6Q86V97 674 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 RASSF3Q86WH2 238 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 C1orf210Q8IVY1 113 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 IFT20Q8IY31 132 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 IFT81Q8WYA0 676 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 SPOCK2Q92563 424 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 RAB7BQ96AH8 199 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 SCRN2Q96FV2 425 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 SMIM14Q96QK8 99 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 PCDH12Q9NPG4 1184 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 CASS4Q9NQ75 786 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 ITM2CQ9NQX7 267 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 SERGEFQ9UGK8 458 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.3□□□□□ -0.44
SDC1-206ENST00000482879 EBF1Q9UH73 591 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 SHOC2Q9UQ13 582 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 PPIL1Q9Y3C6 166 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 V9GYY5 206 aaPredicted RBP12.3□□□□□ -0.44
SDC1-206ENST00000482879 GON4LQ3T8J9 2241 aa12.3□□□□□ -0.44
SDC1-206ENST00000482879 ABCA7Q8IZY2 2146 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 CEP192Q8TEP8 1941 aa12.29□□□□□ -0.44
SDC1-206ENST00000482879 A0A0J9YYE9 177 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms