RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 TMEM191BP0C7N4 346 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 TAS2R50P59544 299 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 KRTAP10-11P60412 298 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 RPL15P61313 204 aaKnown RBP5.05□□□□□ -1.6
VPS50-214ENST00000477935 MECOMQ03112 1051 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 TLE3Q04726 772 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 SF3A3Q12874 501 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS50-214ENST00000477935 BTBD16Q32M84 506 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 RABL6Q3YEC7 729 aaPredicted RBP5.05□□□□□ -1.6
VPS50-214ENST00000477935 ZACNQ401N2 412 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 TATDN1Q6P1N9 297 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 C1orf228Q6PIY5 440 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 RPAINQ86UA6 219 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 UBALD2Q8IYN6 164 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 KIAA2013Q8IYS2 634 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 Q8N9P0 234 aaPredicted RBP5.05□□□□□ -1.6
VPS50-214ENST00000477935 ATG16L2Q8NAA4 619 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 RUBCNQ92622 972 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 RSC1A1Q92681 617 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 EID2BQ96D98 161 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 ZNF347Q96SE7 839 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 TRMOQ9BU70 441 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 ABHD14AQ9BUJ0 271 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 MECRQ9BV79 373 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 KATNAL1Q9BW62 490 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 LMAN2LQ9H0V9 348 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 FOXP1Q9H334 677 aaPredicted RBP5.05□□□□□ -1.6
VPS50-214ENST00000477935 PAPOLBQ9NRJ5 636 aaKnown RBP5.05□□□□□ -1.6
VPS50-214ENST00000477935 IPO11Q9UI26 975 aaKnown RBP5.05□□□□□ -1.6
VPS50-214ENST00000477935 CNTN6Q9UQ52 1028 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 MAST4O15021 2626 aa5.05□□□□□ -1.6
VPS50-214ENST00000477935 ASPMQ8IZT6 3477 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FAM90A18PA6NE21 464 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FAM90A16PA6NEW6 464 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FAM90A9PA6NNJ1 464 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FAM90A5PA8MXJ8 464 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FLOT1O75955 427 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 LARGE1O95461 756 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 RB1P06400 928 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FAM90A15PP0C7V4 464 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FAM90A14PP0C7W9 464 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 IGFBP2P18065 325 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 TGM2P21980 687 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 GRK5P34947 590 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 SERPINF1P36955 418 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FOXL2P58012 376 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 FAM3BP58499 235 aaPredicted RBP5.04□□□□□ -1.6
VPS50-214ENST00000477935 ARHGAP8P85298 464 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 SHC2P98077 582 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 B4GALNT1Q00973 533 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 ICA1Q05084 483 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 GPM6BQ13491 265 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 TWISTNBQ3B726 338 aaPredicted RBP5.04□□□□□ -1.6
VPS50-214ENST00000477935 EPC2Q52LR7 807 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 ADGRF3Q8IZF5 1079 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 SPICE1Q8N0Z3 855 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 SAMD3Q8N6K7 520 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 TSPYL6Q8N831 410 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 ADPRHL1Q8NDY3 354 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 OR52N4Q8NGI2 321 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 NSUN4Q96CB9 384 aaKnown RBP5.04□□□□□ -1.6
VPS50-214ENST00000477935 TUBB6Q9BUF5 446 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 PHF7Q9BWX1 381 aaPredicted RBP5.04□□□□□ -1.6
VPS50-214ENST00000477935 DNAJC18Q9H819 358 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 TAGLN3Q9UI15 199 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 SLC12A4Q9UP95 1085 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 PLXNA3P51805 1871 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 GBF1Q92538 1859 aa5.04□□□□□ -1.6
VPS50-214ENST00000477935 TRBV5-3A0A0A0MS03 114 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 SLC38A8A6NNN8 435 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 TRIM38O00635 465 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 UGDHO60701 494 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 ITGA2BP08514 1039 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 CYP3A4P08684 503 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 ME1P48163 572 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 BEX3Q00994 111 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 RNASELQ05823 741 aaKnown RBP5.03□□□□□ -1.6
VPS50-214ENST00000477935 COASYQ13057 564 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 MORC3Q14149 939 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 PGM5Q15124 567 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 ZNF569Q5MCW4 686 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 LIN54Q6MZP7 749 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 TMEM88Q6PEY1 159 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 IRF2BP2Q7Z5L9 587 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 MYLK4Q86YV6 388 aaPredicted RBP5.03□□□□□ -1.6
VPS50-214ENST00000477935 CERS3Q8IU89 383 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 ARFGAP1Q8N6T3 406 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 TMEM105Q8N8V8 129 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 FAM47BQ8NA70 645 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 ZNF548Q8NEK5 533 aaPredicted RBP5.03□□□□□ -1.6
VPS50-214ENST00000477935 VPS37AQ8NEZ2 397 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 ACER1Q8TDN7 264 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 AFAP1L1Q8TED9 768 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 POF1BQ8WVV4 589 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 HMGB4Q8WW32 186 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 ZBTB9Q96C00 473 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 PIMREGQ9BSJ6 248 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 RTKNQ9BST9 563 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 SH2D4AQ9H788 454 aa5.03□□□□□ -1.6
VPS50-214ENST00000477935 SFXN1Q9H9B4 322 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms