RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 AGERQ15109 404 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 ASTE1Q2TB18 679 aaPredicted RBP14.21□□□□□ -0.13
UPF3A-204ENST00000475218 CDCP2Q5VXM1 449 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 ALKBH5Q6P6C2 394 aaKnown RBP14.21□□□□□ -0.13
UPF3A-204ENST00000475218 BRAT1Q6PJG6 821 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 TEKT4Q8WW24 435 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 LRRC61Q9BV99 259 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 PACSIN1Q9BY11 444 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 SP110Q9HB58 689 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 ATP8A1Q9Y2Q0 1164 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 LUC7L2Q9Y383 392 aaKnown RBP14.21□□□□□ -0.13
UPF3A-204ENST00000475218 CSNK1G3Q9Y6M4 447 aa14.21□□□□□ -0.13
UPF3A-204ENST00000475218 SHROOM3Q8TF72 1996 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 GOLGA6L19H0YKK7 550 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 AQP9O43315 295 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 EIF4A3P38919 411 aaKnown RBP14.2□□□□□ -0.14
UPF3A-204ENST00000475218 YPEL5P62699 121 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 TPM4P67936 248 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 C1orf61Q13536 156 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 IHHQ14623 411 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 RFTN1Q14699 578 aaPredicted RBP14.2□□□□□ -0.14
UPF3A-204ENST00000475218 LBRQ14739 615 aaKnown RBP14.2□□□□□ -0.14
UPF3A-204ENST00000475218 ATP13A4Q4VNC1 1196 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 MACC1Q6ZN28 852 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 PHACTR4Q8IZ21 702 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 CACTIN-AS1Q8N1I8 211 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 PELI3Q8N2H9 469 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 LZTR1Q8N653 840 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 PLA2G15Q8NCC3 412 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 ZNF599Q96NL3 588 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 CINPQ9BW66 212 aaPredicted RBP14.2□□□□□ -0.14
UPF3A-204ENST00000475218 ATP13A3Q9H7F0 1226 aa14.2□□□□□ -0.14
UPF3A-204ENST00000475218 URB1O60287 2271 aaKnown RBP14.2□□□□□ -0.14
UPF3A-204ENST00000475218 OPA1O60313 960 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 SCNN1BP51168 640 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 DAB2P98082 770 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 RTP5Q14D33 572 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 LRRC14Q15048 493 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 PTPRRQ15256 657 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 DEFB133Q30KQ1 61 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 CCDC122Q5T0U0 273 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 TMCO4Q5TGY1 634 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 C19orf48Q6RUI8 117 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 TMCO3Q6UWJ1 677 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 LMX1AQ8TE12 382 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 SPOCK2Q92563 424 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 IQCDQ96DY2 449 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 SEPT3Q9UH03 358 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 APOBEC3BQ9UH17 382 aaKnown RBP14.19□□□□□ -0.14
UPF3A-204ENST00000475218 IP6K2Q9UHH9 426 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 OR1A2Q9Y585 309 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 NEMP2A6NFY4 417 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 HTRA2O43464 458 aaPredicted RBP14.19□□□□□ -0.14
UPF3A-204ENST00000475218 TLX3O43711 291 aaPredicted RBP14.19□□□□□ -0.14
UPF3A-204ENST00000475218 SERPINA4P29622 427 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 HNF1BP35680 557 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 ARL4AP40617 200 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 TAS2R40P59535 323 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 INPP5AQ14642 412 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 NFKBIBQ15653 356 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 ALG11Q2TAA5 492 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 PRRT3Q5FWE3 981 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 ZCCHC8Q6NZY4 707 aaKnown RBP14.19□□□□□ -0.14
UPF3A-204ENST00000475218 GUSBP11Q6P575 273 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 LIPIQ6XZB0 460 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 MGME1Q9BQP7 344 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 BOCQ9BWV1 1114 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 NOD2Q9HC29 1040 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 CLCA2Q9UQC9 943 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 PCDHB1Q9Y5F3 818 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 RP1P56715 2156 aa14.19□□□□□ -0.14
UPF3A-204ENST00000475218 H3BM21 787 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 MT-CO3P00414 261 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 ALPPL2P10696 532 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 TSHRP16473 764 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 XPAP23025 273 aaPredicted RBP14.18□□□□□ -0.14
UPF3A-204ENST00000475218 THOP1P52888 689 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 AP1S1P61966 158 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 BCL2L1Q07817 233 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 PTK2BQ14289 1009 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 DPPA4Q7L190 304 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 SLC35F3Q8IY50 421 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 PCDH19Q8TAB3 1148 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 TSACCQ96A04 125 aaPredicted RBP14.18□□□□□ -0.14
UPF3A-204ENST00000475218 TBATAQ96M53 351 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 DNAJC7Q99615 494 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 APOOQ9BUR5 198 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 DUSP23Q9BVJ7 150 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 C1QTNF7Q9BXJ2 289 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 LHX6Q9UPM6 363 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 PCDHGC4Q9Y5F7 938 aa14.18□□□□□ -0.14
UPF3A-204ENST00000475218 A0A087WV48 116 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 A0A1W2PNU3 283 aaPredicted RBP14.17□□□□□ -0.14
UPF3A-204ENST00000475218 A8MX80 341 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 LMO7DNF2Z398 122 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 TOR1BO14657 336 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 TPP1O14773 563 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 YY2O15391 372 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 MFSD11O43934 449 aa14.17□□□□□ -0.14
UPF3A-204ENST00000475218 RECQL5O94762 991 aaPredicted RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms