RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 ABCD3P28288 659 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 HOXA9P31269 272 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 GJA5P36382 358 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 BMPR1AP36894 532 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 SMSP52788 366 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 PRMT2P55345 433 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 MAT1AQ00266 395 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 GRIN1Q05586 938 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ALKBH1Q13686 389 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 GCKRQ14397 625 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 NFIXQ14938 502 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 POU4F3Q15319 338 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 GLRA4Q5JXX5 417 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 AGBL2Q5U5Z8 902 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ATF7IP2Q5U623 682 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 FAM109BQ6ICB4 259 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 LILRA6Q6PI73 481 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 CHST3Q7LGC8 479 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 LINC00523Q86TU6 105 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 RNF152Q8N8N0 203 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 LRRN4CLQ8ND94 238 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 DDX54Q8TDD1 881 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 SPATA13Q96N96 652 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 C12orf57Q99622 126 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 CDADC1Q9BWV3 514 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 RNF208Q9H0X6 261 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 CENPMQ9NSP4 180 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 SIRT3Q9NTG7 399 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 CMTM6Q9NX76 183 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 POLIQ9UNA4 740 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 COLQQ9Y215 455 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 TBC1D30Q9Y2I9 924 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 GDAQ9Y2T3 454 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 RIPK3Q9Y572 518 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 CNTNAP2Q9UHC6 1331 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 PDS5BQ9NTI5 1447 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 PNMA6EA0A0J9YXQ4 647 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 TEX51A0A1B0GUA7 166 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 FAM234BA2RU67 622 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 A6NL46 340 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ZNF891A8MT65 544 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 FAM86B1E9PN63 330 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 H7C1Q1 480 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 GRM8O00222 908 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 TNPO2O14787 897 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 TUSC2O75896 110 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 VAMP5O95183 116 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ALPPP05187 535 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 FAM86B2P0C5J1 330 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ALPPL2P10696 532 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 TM4SF1P30408 202 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 CHRNA5P30532 468 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 EIF2S3P41091 472 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 ADCYAP1R1P41586 468 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 EIF2B2P49770 351 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 NEK4P51957 841 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 POLGP54098 1239 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 YPEL5P62699 121 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 SLC3A1Q07837 685 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 KLF1Q13351 362 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 HKDC1Q2TB90 917 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 DUSP28Q4G0W2 176 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 NKAIN1Q4KMZ8 207 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 TIGD2Q4W5G0 525 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ACTBL2Q562R1 376 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 YIF1BQ5BJH7 314 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 INTS6LQ5JSJ4 861 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 RNFT1Q5M7Z0 435 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 CEP162Q5TB80 1403 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 STEAP3Q658P3 488 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ADNP2Q6IQ32 1131 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 NFRKBQ6P4R8 1299 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 RNF19BQ6ZMZ0 732 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 MIGA2Q7L4E1 593 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 TRMT11Q7Z4G4 463 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 DCXRQ7Z4W1 244 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 AMZ2Q86W34 360 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 SCN4BQ8IWT1 228 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 SELENOHQ8IZQ5 122 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 FAM86B1Q8N7N1 296 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 POGLUT1Q8NBL1 392 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 TDRD9Q8NDG6 1382 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 PCDH19Q8TAB3 1148 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 SLC2A14Q8TDB8 520 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 TGFBRAP1Q8WUH2 860 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 PROX1Q92786 737 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 PGAP3Q96FM1 320 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 TSPAN17Q96FV3 270 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 BOD1Q96IK1 185 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ELMO2Q96JJ3 720 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 PDCD2LQ9BRP1 358 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 PELOQ9BRX2 385 aaKnown RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 EFHD1Q9BUP0 239 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ANKRD30BQ9BXX2 1392 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 GLIS2Q9BZE0 524 aaPredicted RBP3.51□□□□□ -1.85
UBR3-208ENST00000474426 TMEM168Q9H0V1 697 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 OR51V1Q9H2C8 321 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 ZBTB3Q9H5J0 574 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 CABP2Q9NPB3 220 aa3.51□□□□□ -1.85
UBR3-208ENST00000474426 FAM212BQ9NTI7 297 aaPredicted RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms