RNA–Protein interactions for RNA: ENST00000467263.1

SMC4-207, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 401 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-207ENST00000467263 ESX1Q8N693 406 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 NOC3LQ8WTT2 800 aaKnown RBP4.31□□□□□ -1.72
SMC4-207ENST00000467263 BBS4Q96RK4 519 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 SIN3AQ96ST3 1273 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 MXRA8Q9BRK3 442 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 C6orf106Q9H6K1 298 aaPredicted RBP4.31□□□□□ -1.72
SMC4-207ENST00000467263 C20orf141Q9NUB4 165 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 CISD1Q9NZ45 108 aaKnown RBP4.31□□□□□ -1.72
SMC4-207ENST00000467263 HCN3Q9P1Z3 774 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 CARD8Q9Y2G2 431 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 SLC45A1Q9Y2W3 748 aa4.31□□□□□ -1.72
SMC4-207ENST00000467263 GAGE10A6NGK3 116 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 IFNL4K9M1U5 179 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 KLK8O60259 260 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 XBP1P17861 261 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 RRP1P56182 461 aaKnown RBP4.3□□□□□ -1.72
SMC4-207ENST00000467263 KIF5AQ12840 1032 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 ITGADQ13349 1161 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 CAMK1Q14012 370 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 DHX34Q14147 1143 aaKnown RBP4.3□□□□□ -1.72
SMC4-207ENST00000467263 EFHC1Q5JVL4 640 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 KLHL24Q6TFL4 600 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 CCDC129Q6ZRS4 1044 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 ARMC9Q7Z3E5 817 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 TDRPQ86YL5 185 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 C11orf65Q8NCR3 313 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 NR4A3Q92570 626 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 SNAPC3Q92966 411 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 OTULINQ96BN8 352 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 KIF1BPQ96EK5 621 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 KLHL15Q96M94 604 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 MYH16Q9H6N6 1097 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.3□□□□□ -1.72
SMC4-207ENST00000467263 PCDHGB1Q9Y5G3 927 aa4.3□□□□□ -1.72
SMC4-207ENST00000467263 hDV102S1A0JD36 115 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 SRRM3A6NNA2 597 aaPredicted RBP4.29□□□□□ -1.72
SMC4-207ENST00000467263 TSPAN4O14817 238 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 BCAT2O15382 392 aaPredicted RBP4.29□□□□□ -1.72
SMC4-207ENST00000467263 HSPA12AO43301 675 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 GRID2O43424 1007 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 PPP1R3DO95685 299 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 IGKV3-20P01619 116 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 HEXAP06865 529 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 SSTR2P30874 369 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 PAFAH1B1P43034 410 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 ART1P52961 327 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 SEC61A1P61619 476 aaKnown RBP4.29□□□□□ -1.72
SMC4-207ENST00000467263 TUBA1BP68363 451 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 MYBPHQ13203 477 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 PPP2R5BQ15173 497 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 SLC9B1Q4ZJI4 515 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 XKR9Q5GH70 373 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 FAM69AQ5T7M9 428 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 GFI1BQ5VTD9 330 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.29□□□□□ -1.72
SMC4-207ENST00000467263 RRM2BQ7LG56 351 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 C16orf82Q7Z2V1 217 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 DHX40Q8IX18 779 aaKnown RBP4.29□□□□□ -1.72
SMC4-207ENST00000467263 PGBD5Q8N414 524 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 TCP11L2Q8N4U5 519 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 ZCCHC10Q8TBK6 192 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 ST8SIA4Q92187 359 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 RTP4Q96DX8 246 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 RNF125Q96EQ8 232 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 LRFN5Q96NI6 719 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 EIF2AK1Q9BQI3 630 aaKnown RBP4.29□□□□□ -1.72
SMC4-207ENST00000467263 IL25Q9H293 177 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 SMYD2Q9NRG4 433 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 ARHGAP26Q9UNA1 814 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 CRYL1Q9Y2S2 319 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 FAM96BQ9Y3D0 163 aa4.29□□□□□ -1.72
SMC4-207ENST00000467263 A0A0U1RQJ8 604 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 NPHP1O15259 732 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 ZIC3O60481 467 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 MTA2O94776 668 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 AGR2O95994 175 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 ETFAP13804 333 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 COX7A2P14406 83 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 ITGAXP20702 1163 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 ABCD3P28288 659 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 SLC39A14Q15043 492 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 BAK1Q16611 211 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 C9orf50Q5SZB4 431 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 NAA35Q5VZE5 725 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 C9orf57Q5W0N0 161 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 FBXO46Q6PJ61 603 aaPredicted RBP4.28□□□□□ -1.72
SMC4-207ENST00000467263 RHBDF2Q6PJF5 856 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 H1FNTQ75WM6 255 aaPredicted RBP4.28□□□□□ -1.72
SMC4-207ENST00000467263 ZC3HC1Q86WB0 502 aaKnown RBP4.28□□□□□ -1.72
SMC4-207ENST00000467263 PPM1EQ8WY54 764 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 GLIS2Q9BZE0 524 aaPredicted RBP4.28□□□□□ -1.72
SMC4-207ENST00000467263 VEZTQ9HBM0 779 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 WASH6PQ9NQA3 447 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 DDX4Q9NQI0 724 aaKnown RBP4.28□□□□□ -1.72
SMC4-207ENST00000467263 PLSCR4Q9NRQ2 329 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 NFE2L3Q9Y4A8 694 aa4.28□□□□□ -1.72
SMC4-207ENST00000467263 LSM4Q9Y4Z0 139 aaKnown RBP4.28□□□□□ -1.72
SMC4-207ENST00000467263 CCDC196A0A1B0GTZ2 297 aa4.27□□□□□ -1.73
SMC4-207ENST00000467263 BTBD18B2RXH4 712 aa4.27□□□□□ -1.73
SMC4-207ENST00000467263 NPIPB11E5RHQ5 1161 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms