RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 TKTL2Q9H0I9 626 aa3.54□□□□□ -1.84
RFC4-211ENST00000460408 DDX4Q9NQI0 724 aaKnown RBP3.54□□□□□ -1.84
RFC4-211ENST00000460408 DIAPH3Q9NSV4 1193 aa3.54□□□□□ -1.84
RFC4-211ENST00000460408 SIRT3Q9NTG7 399 aaPredicted RBP3.54□□□□□ -1.84
RFC4-211ENST00000460408 LIMA1Q9UHB6 759 aaKnown RBP3.54□□□□□ -1.84
RFC4-211ENST00000460408 ADAM18Q9Y3Q7 739 aa3.54□□□□□ -1.84
RFC4-211ENST00000460408 IGLV5-39A0A0G2JS06 123 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 LIPT2A6NK58 231 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 USP17L23D6RBM5 183 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 I6L893 689 aaPredicted RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 SNAP23O00161 211 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 ZC3H11AO75152 810 aaKnown RBP eCLIP3.53□□□□□ -1.84
RFC4-211ENST00000460408 SOX30O94993 753 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 IRF1P10914 325 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 CDH2P19022 906 aaPredicted RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 SHMT1P34896 483 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 ME1P48163 572 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 PIP4K2AP48426 406 aaPredicted RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 GNAQP50148 359 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 DRG2P55039 364 aaKnown RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 CEBPZQ03701 1054 aaKnown RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 MAMLD1Q13495 774 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 RUNX2Q13950 521 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 FGFBP1Q14512 234 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 PPP2R5BQ15173 497 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 RABEP1Q15276 862 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SHBQ15464 509 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 MED22Q15528 200 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SOWAHAQ2M3V2 549 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 ZNF284Q2VY69 593 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SGO1Q5FBB7 561 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 PRAMEF19Q5SWL8 479 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SPATA1Q5VX52 437 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 CFAP161Q6P656 301 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 TRAPPC11Q7Z392 1133 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 MRPL10Q7Z7H8 261 aaKnown RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 TDRPQ86YL5 185 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 LURAP1LQ8IV03 231 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SLC35F3Q8IY50 421 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 NRACQ8N912 160 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SLC35F5Q8WV83 523 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 FAM149B1Q96BN6 582 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 MMABQ96EY8 250 aaPredicted RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 URB1-AS1Q96HZ7 61 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 BBS4Q96RK4 519 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 EBF3Q9H4W6 596 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 POLR1BQ9H9Y6 1135 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 ASAH2Q9NR71 780 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SMYD2Q9NRG4 433 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 SLC6A13Q9NSD5 602 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 PLK2Q9NYY3 685 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 FAM96BQ9Y3D0 163 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 LSM4Q9Y4Z0 139 aaKnown RBP3.53□□□□□ -1.84
RFC4-211ENST00000460408 RUSC2Q8N2Y8 1516 aa3.53□□□□□ -1.84
RFC4-211ENST00000460408 FAM237BA0A1B0GVD1 139 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 A0A1W2PRG0 241 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 ANKRD18BA2A2Z9 1011 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 TTC36A6NLP5 189 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 LRRC53A6NM62 1247 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 HMGB1P1B2RPK0 211 aaPredicted RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 SOCS2O14508 198 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 SEC14L5O43304 696 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 ATP2C2O75185 946 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 EIF2S1P05198 315 aaKnown RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 ETFAP13804 333 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 HOXB2P14652 356 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 TBXAS1P24557 533 aaPredicted RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 HOXD13P35453 343 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 ARL3P36405 182 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 THPOP40225 353 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 RFX5P48382 616 aaPredicted RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 PLCD1P51178 756 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 ARF3P61204 181 aaPredicted RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 ARF1P84077 181 aaKnown RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 ADORA2A-AS1P86434 159 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 CSTF3Q12996 717 aaKnown RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 TRAF1Q13077 416 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 PRKG2Q13237 762 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 OLIG2Q13516 323 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 TWIST1Q15672 202 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 TCTN1Q2MV58 587 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 DPCR1Q3MIW9 517 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 CXorf66Q5JRM2 361 aaPredicted RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 MANEAQ5SRI9 462 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 PXDC1Q5TGL8 231 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 HIST2H2BCQ6DN03 193 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 HIST2H2BDQ6DRA6 164 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 TTI2Q6NXR4 508 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 CPLX2Q6PUV4 134 aaKnown RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 QSOX2Q6ZRP7 698 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 Q6ZSV7 163 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 IKBIPQ70UQ0 350 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 BRINP3Q76B58 766 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 PATL1Q86TB9 770 aaKnown RBP3.52□□□□□ -1.85
RFC4-211ENST00000460408 SFTPA2Q8IWL1 248 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 ARHGAP12Q8IWW6 846 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 CCDC105Q8IYK2 499 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 PARP16Q8N5Y8 322 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 FRMD1Q8N878 549 aa3.52□□□□□ -1.85
RFC4-211ENST00000460408 ARHGEF2Q92974 986 aaKnown RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms