RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 C1QTNF7Q9BXJ2 289 aa18.82■□□□□ 0.6
USP39-209ENST00000458268 CEP41Q9BYV8 373 aa18.82■□□□□ 0.6
USP39-209ENST00000458268 DUSP10Q9Y6W6 482 aa18.82■□□□□ 0.6
USP39-209ENST00000458268 C3orf70A6NLC5 250 aaPredicted RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 KCNK1O00180 336 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 RIOK3O14730 519 aaKnown RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 MATN3O15232 486 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 PSTPIP1O43586 416 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 TOP3BO95985 862 aaKnown RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 PCCBP05166 539 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 ELFN1P0C7U0 828 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 IGFALSP35858 605 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 MMP12P39900 470 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 THOP1P52888 689 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 POLR2LP62875 67 aaKnown RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 TRAF2Q12933 501 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 PDE1CQ14123 709 aaPredicted RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 TCEAL1Q15170 157 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 SHBQ15464 509 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 TMEM52BQ4KMG9 183 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 LRRC38Q5VT99 294 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 KYAT3Q6YP21 454 aaKnown RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 LRRC49Q8IUZ0 686 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 SLC22A18ASQ8N1D0 253 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 PLD5Q8N7P1 536 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 TPCN2Q8NHX9 752 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 BMFQ96LC9 184 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 POLR1EQ9GZS1 481 aaKnown RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 IMPACTQ9P2X3 320 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 FTSJ1Q9UET6 329 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 SALL4Q9UJQ4 1053 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 REXO2Q9Y3B8 237 aaKnown RBP18.81■□□□□ 0.6
USP39-209ENST00000458268 PCDHGB2Q9Y5G2 931 aa18.81■□□□□ 0.6
USP39-209ENST00000458268 A0A0A6YYK5 440 aaPredicted RBP18.8■□□□□ 0.6
USP39-209ENST00000458268 MACROD2A1Z1Q3 448 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 FFAR2O15552 330 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 JCHAINP01591 159 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 HLA-DQB2P05538 268 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 CCNB1P14635 433 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 CTPS1P17812 591 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 CCNCP24863 283 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 VAV2P52735 878 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 ACOX1Q15067 660 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 IRF4Q15306 451 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 C11orf63Q6NUN7 778 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 SPOCD1Q6ZMY3 1216 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 ABI3BPQ7Z7G0 1075 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 ZSCAN30Q86W11 494 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 HCAR2Q8TDS4 363 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 MBNL1Q9NR56 388 aaKnown RBP18.8■□□□□ 0.6
USP39-209ENST00000458268 HAUS2Q9NVX0 235 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 B4GALT6Q9UBX8 382 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.8■□□□□ 0.6
USP39-209ENST00000458268 HS3ST3A1Q9Y663 406 aa18.8■□□□□ 0.6
USP39-209ENST00000458268 TRAFD1O14545 582 aaPredicted RBP18.79■□□□□ 0.6
USP39-209ENST00000458268 YKT6O15498 198 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 PCDHGA12O60330 932 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 FTH1P19P0C7X4 201 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 ZFXP17010 805 aaPredicted RBP18.79■□□□□ 0.6
USP39-209ENST00000458268 CR2P20023 1033 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 FECHP22830 423 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 RABIFP47224 123 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 SUOXP51687 545 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 EPHB1P54762 984 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 HADHBP55084 474 aaKnown RBP18.79■□□□□ 0.6
USP39-209ENST00000458268 HNRNPDQ14103 355 aaKnown RBP18.79■□□□□ 0.6
USP39-209ENST00000458268 LRRC14Q15048 493 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 PTPRRQ15256 657 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 TCEA2Q15560 299 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 ARMC12Q5T9G4 340 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 CCDC181Q5TID7 509 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 SLC9A4Q6AI14 798 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 SAP25Q8TEE9 199 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 KRT35Q92764 455 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 HDAC11Q96DB2 347 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 KLF6Q99612 283 aaPredicted RBP18.79■□□□□ 0.6
USP39-209ENST00000458268 LACRTQ9GZZ8 138 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 SAE1Q9UBE0 346 aaPredicted RBP18.79■□□□□ 0.6
USP39-209ENST00000458268 ANGPTL2Q9UKU9 493 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 RAI2Q9Y5P3 530 aa18.79■□□□□ 0.6
USP39-209ENST00000458268 GOLGA6CA6NDK9 693 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 GOLGA6BA6NDN3 693 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 PPP1R12AO14974 1030 aaPredicted RBP18.78■□□□□ 0.6
USP39-209ENST00000458268 HYAL3O43820 417 aaPredicted RBP18.78■□□□□ 0.6
USP39-209ENST00000458268 CST8O60676 142 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 CBFA2T3O75081 653 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 SOCS5O75159 536 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 ATXN1LP0C7T5 689 aaKnown RBP18.78■□□□□ 0.6
USP39-209ENST00000458268 GOLGA6DP0CG33 693 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 CDKN2BP42772 138 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 PDK1Q15118 436 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 TPRG1LQ5T0D9 272 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 DPPA4Q7L190 304 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 TMEM139Q8IV31 216 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 TP53I13Q8NBR0 393 aaPredicted RBP18.78■□□□□ 0.6
USP39-209ENST00000458268 DENND6BQ8NEG7 585 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 MAML1Q92585 1016 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 ECHDC3Q96DC8 303 aa18.78■□□□□ 0.6
USP39-209ENST00000458268 CNDP2Q96KP4 475 aaKnown RBP18.78■□□□□ 0.6
USP39-209ENST00000458268 LENG8Q96PV6 779 aaPredicted RBP18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms