RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 IRF2BP2Q7Z5L9 587 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 PHACTR4Q8IZ21 702 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 UNC13CQ8NB66 2214 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 NSMCE1Q8WV22 266 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 TMEM159Q96B96 161 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 WBP1Q96G27 269 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 ZNF599Q96NL3 588 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 STRADBQ9C0K7 418 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 DHX35Q9H5Z1 703 aaKnown RBP7.14□□□□□ -1.27
VPS41-208ENST00000448833 PRORYQ9H606 182 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 LRRC19Q9H756 370 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 ZWILCHQ9H900 591 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 AIPL1Q9NZN9 384 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 BAHCC1Q9P281 2608 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 AP4E1Q9UPM8 1137 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 NEU3Q9UQ49 428 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 PCDHGA8Q9Y5G5 932 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 PCDHGA4Q9Y5G9 962 aa7.14□□□□□ -1.27
VPS41-208ENST00000448833 LRP4O75096 1905 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 A0A1W2PQC6 194 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 FAM170AA1A519 330 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 TSPAN11A1L157 253 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 TMEM191CA6NGB0 347 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 RNF103O00237 685 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 CACNB4O00305 520 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 TNFRSF10CO14798 259 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 ATXN7O15265 892 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 YY2O15391 372 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 TLX3O43711 291 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 NEBLO76041 1014 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 TNFP01375 233 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 FTLP02792 175 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 HOXC4P09017 264 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 GKP32189 559 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 ARL4AP40617 200 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 LIG3P49916 1009 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 PAPOLAP51003 745 aaKnown RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 AP1S1P61966 158 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 RHDQ02161 417 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 IL10RBQ08334 325 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 EIF2B5Q13144 721 aaKnown RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 MAMLD1Q13495 774 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 MTM1Q13496 603 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 SPIDRQ14159 915 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 INPP5AQ14642 412 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 NFATC4Q14934 902 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 CYTH1Q15438 398 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 ASIC2Q16515 512 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 DEFB133Q30KQ1 61 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 RAB6CQ53S08 254 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 RALGPS1Q5JS13 557 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 PLEKHA7Q6IQ23 1121 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 LEKR1Q6ZMV7 388 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 SRLQ86TD4 932 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 LRRC49Q8IUZ0 686 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 NDUFAF2Q8N183 169 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 PYROXD2Q8N2H3 581 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 ARL10Q8N8L6 244 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 TP53I13Q8NBR0 393 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 WDR36Q8NI36 951 aaKnown RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 KCNE4Q8WWG9 221 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 IQCDQ96DY2 449 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 WDR92Q96MX6 357 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 SLC46A1Q96NT5 459 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 FCRL3Q96P31 734 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 WRAP53Q9BUR4 548 aaKnown RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 APOOQ9BUR5 198 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 CINPQ9BW66 212 aaPredicted RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 RAB6CQ9H0N0 254 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 NOL6Q9H6R4 1146 aaKnown RBP7.13□□□□□ -1.27
VPS41-208ENST00000448833 SP110Q9HB58 689 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 PCDH12Q9NPG4 1184 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 SEPT3Q9UH03 358 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 PADI4Q9UM07 663 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 ATP8A1Q9Y2Q0 1164 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 ACTL7AQ9Y615 435 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 DGKBQ9Y6T7 804 aa7.13□□□□□ -1.27
VPS41-208ENST00000448833 ARHGEF17Q96PE2 2063 aaPredicted RBP7.12□□□□□ -1.27
VPS41-208ENST00000448833 CCDC187A0A096LP49 1063 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 H3BRJ5 948 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 J3KR12 359 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 ERVH48-1M5A8F1 160 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 MUSKO15146 869 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 SPINT1O43278 529 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 GJB6O95452 261 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 MPOP05164 745 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 ELFN1P0C7U0 828 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 C6P13671 934 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PNLIPP16233 465 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 TSHRP16473 764 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 ERCC2P18074 760 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 TGM2P21980 687 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 CES1P23141 567 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 ITPKBP27987 946 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 SERPINB6P35237 376 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PCK1P35558 622 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 IGFALSP35858 605 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 MMP12P39900 470 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 PRKCIP41743 596 aa7.12□□□□□ -1.27
VPS41-208ENST00000448833 EMP3P54852 163 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms