RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 BEST1O76090 585 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 KAT7O95251 611 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 RARGP13631 454 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 APEHP13798 732 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 PRPH2P23942 346 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 DUSP1P28562 367 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 ACSL1P33121 698 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 ABCD1P33897 745 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 BSGP35613 385 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 PPARGP37231 505 aaPredicted RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 THBS3P49746 956 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 DIO1P49895 249 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 AGTR2P50052 363 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 EIF3BP55884 814 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 RPL7AP62424 266 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 RAE1P78406 368 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 PSMD6Q15008 389 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 MED22Q15528 200 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 TWIST1Q15672 202 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 DUSP28Q4G0W2 176 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 SLC9B1Q4ZJI4 515 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 MTFR2Q6P444 385 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 KYAT3Q6YP21 454 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 SLC39A5Q6ZMH5 540 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 RRM2BQ7LG56 351 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 VPS52Q8N1B4 723 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 C17orf53Q8N3J3 647 aaPredicted RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 C12orf76Q8N812 135 aaPredicted RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 CCDC191Q8NCU4 936 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 NCSTNQ92542 709 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 ZMAT2Q96NC0 199 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 LBHD1Q9BQE6 289 aaPredicted RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 CLSTN3Q9BQT9 956 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 NPLQ9BXD5 320 aaPredicted RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 TTC12Q9H892 705 aaPredicted RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 SFXN1Q9H9B4 322 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 SH3GLB2Q9NR46 395 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 ABHD10Q9NUJ1 306 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 IL1RAPL1Q9NZN1 696 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 EHD2Q9NZN4 543 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 MPP6Q9NZW5 540 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 LIMA1Q9UHB6 759 aaKnown RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 B3GNT3Q9Y2A9 372 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 KCNE2Q9Y6J6 123 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 KIF16BQ96L93 1317 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 ANKRD26Q9UPS8 1709 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 TECPR2O15040 1411 aa4.37□□□□□ -1.71
VPS29-202ENST00000447578 CDK12Q9NYV4 1490 aaPredicted RBP4.37□□□□□ -1.71
VPS29-202ENST00000447578 CPS1P31327 1500 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 LRRC7Q96NW7 1537 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 CDC42BPGQ6DT37 1551 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 SETD1AO15047 1707 aaKnown RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 TEX13CA0A0J9YWL9 993 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 TTC34A8MYJ7 566 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 MYO1GB0I1T2 1018 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 PRR23D1E9PI22 279 aaPredicted RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 H3BNX3 289 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 PER2O15055 1255 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 CCNT1O60563 726 aaKnown RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 TLR2O60603 784 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 PRAMEF2O60811 474 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 GJB3O75712 270 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 SEC14L2O76054 403 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 CRYABP02511 175 aaKnown RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 APOA4P06727 396 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 PRR23D2P0DMB1 279 aaPredicted RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 PSG1P11464 419 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 IGFBP2P18065 325 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 SLC8A1P32418 973 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 ICAM3P32942 547 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 HTR6P50406 440 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 GPC5P78333 572 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 LRMPQ12912 555 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 EPS8Q12929 822 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 BYSLQ13895 437 aaKnown RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 AP5B1Q2VPB7 878 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 SLC30A6Q6NXT4 461 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 TMEM65Q6PI78 240 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 KRT74Q7RTS7 529 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 SZRD1Q7Z422 152 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 SCN4BQ8IWT1 228 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 WDTC1Q8N5D0 677 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 ADPRHL1Q8NDY3 354 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 MAFAQ8NHW3 353 aaPredicted RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 AKAP1Q92667 903 aaKnown RBP eCLIP4.36□□□□□ -1.71
VPS29-202ENST00000447578 JAKMIP2Q96AA8 810 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 RADILQ96JH8 1075 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 CAMK1GQ96NX5 476 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 PIP5K1AQ99755 562 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 BAG1Q99933 345 aaPredicted RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 HDHD5Q9BXW7 423 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 TXLNGYQ9BZA5 131 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 EPHX3Q9H6B9 360 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 UPF2Q9HAU5 1272 aaKnown RBP4.36□□□□□ -1.71
VPS29-202ENST00000447578 ERVK-5Q9HDB9 667 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 POT1Q9NUX5 634 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 WWOXQ9NZC7 414 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 PEMTQ9UBM1 199 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 GIMAP2Q9UG22 337 aa4.36□□□□□ -1.71
VPS29-202ENST00000447578 SQORQ9Y6N5 450 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms