RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 FGL2Q14314 439 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 BBS12Q6ZW61 710 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 TFB1MQ8WVM0 346 aaKnown RBP18.8■□□□□ 0.6
SHH-204ENST00000441114 SKA1Q96BD8 255 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 ECHDC3Q96DC8 303 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 AGAP3Q96P47 875 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 ZDHHC5Q9C0B5 715 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 GAREM1Q9H706 876 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 IL21RQ9HBE5 538 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 ATP8A1Q9Y2Q0 1164 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 PPP2R2CQ9Y2T4 447 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 COQ6Q9Y2Z9 468 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 PCDHB9Q9Y5E1 797 aa18.8■□□□□ 0.6
SHH-204ENST00000441114 A0A1W2PR77 199 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 RIOK3O14730 519 aaKnown RBP18.79■□□□□ 0.6
SHH-204ENST00000441114 VILLO15195 856 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 OPHN1O60890 802 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 CPP00450 1065 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 SUOXP51687 545 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 IFI35P80217 286 aaPredicted RBP18.79■□□□□ 0.6
SHH-204ENST00000441114 NIPAL4Q0D2K0 466 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 HLA-BQ31612 363 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 TMEM52BQ4KMG9 183 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 RALGPS1Q5JS13 557 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 PRAMEF14Q5SWL7 426 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 IL12RB2Q99665 862 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 FAM118BQ9BPY3 351 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 BRD8Q9H0E9 1235 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 AMACRQ9UHK6 382 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 RAI2Q9Y5P3 530 aa18.79■□□□□ 0.6
SHH-204ENST00000441114 DCDC2BA2VCK2 349 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 GOLGA8CPA6NN73 597 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 H0Y8X5 98 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 H7C0C1 242 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 RAD51BO15315 384 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 HTRA2O43464 458 aaPredicted RBP18.78■□□□□ 0.6
SHH-204ENST00000441114 SOCS5O75159 536 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 TM7SF2O76062 418 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 KCNA4P22459 653 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 ATP5OP48047 213 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 ARMC12Q5T9G4 340 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 IL27RAQ6UWB1 636 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 CNTD1Q8N815 330 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 ARRDC2Q8TBH0 407 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 KLHDC7BQ96G42 594 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 HES6Q96HZ4 224 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 RTKNQ9BST9 563 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 C1QTNF2Q9BXJ5 285 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 C10orf88Q9H8K7 445 aa18.78■□□□□ 0.6
SHH-204ENST00000441114 APOC4-APOC2K7ER74 178 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 TLR4O00206 839 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 LZTS3O60299 673 aaPredicted RBP18.77■□□□□ 0.6
SHH-204ENST00000441114 PGLSO95336 258 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 CER1O95813 267 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 APOC2P02655 101 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 PDHA1P08559 390 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 CTPS1P17812 591 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 CES1P23141 567 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 CD86P42081 329 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 CTSKP43235 329 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 LIG3P49916 1009 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 OTUD4Q01804 1114 aaKnown RBP18.77■□□□□ 0.6
SHH-204ENST00000441114 IHHQ14623 411 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 PUM1Q14671 1186 aaKnown RBP eCLIP18.77■□□□□ 0.6
SHH-204ENST00000441114 PRKD1Q15139 912 aaPredicted RBP18.77■□□□□ 0.6
SHH-204ENST00000441114 PTPRRQ15256 657 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 MFSD2AQ8NA29 543 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 ACTL9Q8TC94 416 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 ALS2CR12Q96Q35 445 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 DLL3Q9NYJ7 618 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 PHTF1Q9UMS5 762 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 CHKBQ9Y259 395 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 EFR3BQ9Y2G0 817 aa18.77■□□□□ 0.6
SHH-204ENST00000441114 CACNA1EQ15878 2313 aa18.77■□□□□ 0.59
SHH-204ENST00000441114 CFAP54Q96N23 3096 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 A0A1W2PQ67 120 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 TJP3O95049 919 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 THEGLP0DJG4 465 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 C6P13671 934 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 PTPN3P26045 913 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 PTPN7P35236 360 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 MMP12P39900 470 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 EPHB1P54762 984 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 IL9RQ01113 521 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 GSE1Q14687 1217 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 NOMO1Q15155 1222 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 TEX44Q53QW1 395 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 DENND2CQ68D51 928 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 ALG1LQ6GMV1 187 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 GCNT7Q6ZNI0 430 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 ZNF662Q6ZS27 426 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 PTAR1Q7Z6K3 402 aaPredicted RBP18.76■□□□□ 0.59
SHH-204ENST00000441114 ZSCAN30Q86W11 494 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 TMEM145Q8NBT3 493 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 RBM15Q96T37 977 aaKnown RBP eCLIP18.76■□□□□ 0.59
SHH-204ENST00000441114 KCNF1Q9H3M0 494 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 B4GALT6Q9UBX8 382 aa18.76■□□□□ 0.59
SHH-204ENST00000441114 FNDC3AQ9Y2H6 1198 aaKnown RBP18.76■□□□□ 0.59
SHH-204ENST00000441114 POM121BA6NF01 834 aa18.75■□□□□ 0.59
SHH-204ENST00000441114 FPGTO14772 594 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms