RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 EDDM13A0A1B0GTR0 161 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 TARSL2A2RTX5 802 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 ARHGAP42A6NI28 874 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 DRGXA6NNA5 263 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 HACD1B0YJ81 288 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 DFFAO00273 331 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 CNTN5O94779 1100 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 STK10O94804 968 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 LUC7L3O95232 432 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 SRPRAP08240 638 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 CD38P28907 300 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 OR1E1P30953 314 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 SLC8A1P32418 973 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 ETFBP38117 255 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 COILP38432 576 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 STK19P49842 368 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 CCR5P51681 352 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 METAP1P53582 386 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 ADPRHP54922 357 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 C21orf59P57076 290 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 ST8SIA6P61647 398 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 PPP2CBP62714 309 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 PPP2CAP67775 309 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 DR1Q01658 176 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 GALNT2Q10471 571 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 BNIP3Q12983 259 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF177Q13360 481 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 XRCC4Q13426 336 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 C5orf22Q49AR2 442 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 SLC45A4Q5BKX6 768 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 DARS2Q6PI48 645 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 GSTA5Q7RTV2 222 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 KANSL1Q7Z3B3 1105 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 MAATS1Q7Z4T9 603 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 TMPRSS12Q86WS5 348 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 STK40Q8N2I9 435 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 NOA1Q8NC60 698 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 SLC35B2Q8TB61 432 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 CNDP2Q96KP4 475 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 RPL10LQ96L21 214 aaKnown RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 OLFM3Q96PB7 478 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 OMDQ99983 421 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 BRD8Q9H0E9 1235 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 SAE1Q9UBE0 346 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 FEZ2Q9UHY8 353 aaPredicted RBP12.31□□□□□ -0.44
PTPRF-208ENST00000437607 FZD4Q9ULV1 537 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 ZNF148Q9UQR1 794 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 PCDHGA1Q9Y5H4 931 aa12.31□□□□□ -0.44
PTPRF-208ENST00000437607 LRRC72A6NJI9 287 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 TLX3O43711 291 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 RNASEH1O60930 286 aaKnown RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 LDOC1O95751 146 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 ITGAVP06756 1048 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 VAV1P15498 845 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 ITPKBP27987 946 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 EPHA8P29322 1005 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 DRD3P35462 400 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 GARSP41250 739 aaKnown RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 PSMD8P48556 350 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 ACADVLP49748 655 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 NUMBP49757 651 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 NDST2P52849 883 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 ECT2LQ008S8 904 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 PPP1R7Q15435 360 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 INAVAQ3KP66 663 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 PARP15Q460N3 678 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 TTC27Q6P3X3 843 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 SETD3Q86TU7 594 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 SPATS2Q86XZ4 545 aaKnown RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 UMODL1-AS1Q8N2C9 162 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 EID2Q8N6I1 236 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 CCDC89Q8N998 374 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 CCNYQ8ND76 341 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 TFB1MQ8WVM0 346 aaKnown RBP12.3□□□□□ -0.44
PTPRF-208ENST00000437607 UBXN4Q92575 508 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 FAM131CQ96AQ9 280 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 HDAC11Q96DB2 347 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 SP110Q9HB58 689 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 AASDHPPTQ9NRN7 309 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 PCYOX1Q9UHG3 505 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 AMACRQ9UHK6 382 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 LRRK1Q38SD2 2015 aa12.3□□□□□ -0.44
PTPRF-208ENST00000437607 RP1P56715 2156 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 FAM187AA6NFU0 413 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 RASA4BC9J798 803 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 KCNN4O15554 427 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 MTSS1O43312 755 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 RASA4O43374 803 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 RAD51CO43502 376 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 LATO43561 262 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 RFPL3O75679 317 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 NEBLO76041 1014 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 HEXIM1O94992 359 aaKnown RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ADH1BP00325 375 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 IFNB1P01574 187 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 MZF1P28698 734 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-208ENST00000437607 ACTN2P35609 894 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 KCNJ1P48048 391 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 OXCT1P55809 520 aa12.29□□□□□ -0.44
PTPRF-208ENST00000437607 NXPH1P58417 271 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms