RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 NCAPGQ9BPX3 1015 aa11.13□□□□□ -0.63
SSBP3-206ENST00000420121 LRRC61Q9BV99 259 aa11.13□□□□□ -0.63
SSBP3-206ENST00000420121 CLPBQ9H078 707 aa11.13□□□□□ -0.63
SSBP3-206ENST00000420121 PCDH18Q9HCL0 1135 aa11.13□□□□□ -0.63
SSBP3-206ENST00000420121 MRPL47Q9HD33 250 aaKnown RBP11.13□□□□□ -0.63
SSBP3-206ENST00000420121 IFNKQ9P0W0 207 aa11.13□□□□□ -0.63
SSBP3-206ENST00000420121 IPO11Q9UI26 975 aaKnown RBP11.13□□□□□ -0.63
SSBP3-206ENST00000420121 BZW2Q9Y6E2 419 aaKnown RBP11.13□□□□□ -0.63
SSBP3-206ENST00000420121 ARHGEF17Q96PE2 2063 aaPredicted RBP11.13□□□□□ -0.63
SSBP3-206ENST00000420121 PTPRQQ9UMZ3 2332 aa11.13□□□□□ -0.63
SSBP3-206ENST00000420121 TTC24A2A3L6 582 aaPredicted RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 NEMP2A6NFY4 417 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 DAPK3O43293 454 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 TLX3O43711 291 aaPredicted RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 MAFKO60675 156 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 PALMO75781 387 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 CELA2BP08218 269 aaPredicted RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 IL4RP24394 825 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 HNRNPH3P31942 346 aaKnown RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 EIF4A3P38919 411 aaKnown RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 LIG3P49916 1009 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 ARSEP51690 589 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 DAB2P98082 770 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 PIGHQ14442 188 aaPredicted RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 RFTN1Q14699 578 aaPredicted RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 ZSCAN23Q3MJ62 389 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 BOLA3Q53S33 107 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 ZCCHC8Q6NZY4 707 aaKnown RBP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 C19orf48Q6RUI8 117 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 MACC1Q6ZN28 852 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 PHACTR4Q8IZ21 702 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 LZTR1Q8N653 840 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 TEKT4Q8WW24 435 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 TBATAQ96M53 351 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 DUSP23Q9BVJ7 150 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 NUP85Q9BW27 656 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 BOCQ9BWV1 1114 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 NRSN2Q9GZP1 204 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 ZWILCHQ9H900 591 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 SP110Q9HB58 689 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.12□□□□□ -0.63
SSBP3-206ENST00000420121 LHX6Q9UPM6 363 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 CLCA2Q9UQC9 943 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 ATP8A1Q9Y2Q0 1164 aa11.12□□□□□ -0.63
SSBP3-206ENST00000420121 A0A087WV48 116 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 H3BM21 787 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 H3BRJ5 948 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 TOR1BO14657 336 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 TPP1O14773 563 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 CASC3O15234 703 aaKnown RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 LZTS3O60299 673 aaPredicted RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 OPA1O60313 960 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 MT-CO3P00414 261 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 GP1BAP07359 652 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 CD48P09326 243 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 ALPPL2P10696 532 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 HOXB3P14651 431 aaPredicted RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 SERPINA4P29622 427 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 CASP14P31944 242 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 THOP1P52888 689 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 E2F1Q01094 437 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 MMRN1Q13201 1228 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 C1orf61Q13536 156 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 LBRQ14739 615 aaKnown RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 LRRC14Q15048 493 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 ASTE1Q2TB18 679 aaPredicted RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 COL28A1Q2UY09 1125 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 DEFB133Q30KQ1 61 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 TMCO4Q5TGY1 634 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 GUSBP11Q6P575 273 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 ALKBH5Q6P6C2 394 aaKnown RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 LIPIQ6XZB0 460 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 PELI3Q8N2H9 469 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 PLA2G15Q8NCC3 412 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 LMX1AQ8TE12 382 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 HSPH1Q92598 858 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 NXPE2Q96DL1 559 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 IQCDQ96DY2 449 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 ZNF599Q96NL3 588 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 CINPQ9BW66 212 aaPredicted RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 C1QTNF7Q9BXJ2 289 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 XPO4Q9C0E2 1151 aaKnown RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 ATP13A3Q9H7F0 1226 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 USP29Q9HBJ7 922 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 SCUBE2Q9NQ36 999 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 APOBEC3BQ9UH17 382 aaKnown RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 SALL4Q9UJQ4 1053 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 ANAPC7Q9UJX3 599 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 LUC7L2Q9Y383 392 aaKnown RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 PCDHB1Q9Y5F3 818 aa11.11□□□□□ -0.63
SSBP3-206ENST00000420121 SMG1Q96Q15 3661 aaKnown RBP11.11□□□□□ -0.63
SSBP3-206ENST00000420121 ZFC3H1O60293 1989 aaKnown RBP11.1□□□□□ -0.63
SSBP3-206ENST00000420121 SCN8AQ9UQD0 1980 aa11.1□□□□□ -0.63
SSBP3-206ENST00000420121 BPTFQ12830 3046 aa11.1□□□□□ -0.63
SSBP3-206ENST00000420121 EME2A4GXA9 379 aaPredicted RBP11.1□□□□□ -0.63
SSBP3-206ENST00000420121 CFAP69A5D8W1 941 aa11.1□□□□□ -0.63
SSBP3-206ENST00000420121 LMO7DNF2Z398 122 aa11.1□□□□□ -0.63
SSBP3-206ENST00000420121 HTRA2O43464 458 aaPredicted RBP11.1□□□□□ -0.63
SSBP3-206ENST00000420121 TSHRP16473 764 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms