RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ZSWIM9Q86XI8 627 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 IGDCC3Q8IVU1 814 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 SIX5Q8N196 739 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 TXNDC5Q8NBS9 432 aaKnown RBP14.34□□□□□ -0.11
SF3B1-204ENST00000414963 OR2T3Q8NH03 318 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 BRSK1Q8TDC3 778 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 ANKRD7Q92527 254 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 KLHL32Q96NJ5 620 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 MCCC1Q96RQ3 725 aaPredicted RBP14.34□□□□□ -0.11
SF3B1-204ENST00000414963 LYSMD1Q96S90 227 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 WDR83Q9BRX9 315 aaKnown RBP14.34□□□□□ -0.11
SF3B1-204ENST00000414963 KIFC1Q9BW19 673 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 MRM3Q9HC36 420 aaKnown RBP14.34□□□□□ -0.11
SF3B1-204ENST00000414963 MAGEE1Q9HCI5 957 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 ZDHHC4Q9NPG8 344 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 HACD3Q9P035 362 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 MUTYHQ9UIF7 546 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 SARDHQ9UL12 918 aa14.34□□□□□ -0.11
SF3B1-204ENST00000414963 NDRG2Q9UN36 371 aaKnown RBP14.34□□□□□ -0.11
SF3B1-204ENST00000414963 A0A0J9YYE9 177 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 TTC4O95801 387 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 CPP00450 1065 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 TRBC1P01850 177 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 GSTA2P09210 222 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 TIMP2P16035 220 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 ADRA1DP25100 572 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PSMA3P25788 255 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 ITGB7P26010 798 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 ELK3P41970 407 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 WASP42768 502 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PMS2P54278 862 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 STARD3Q14849 445 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 FASTKD3Q14CZ7 662 aaKnown RBP14.33□□□□□ -0.12
SF3B1-204ENST00000414963 TJAP1Q5JTD0 557 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 FAM46CQ5VWP2 391 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PKN3Q6P5Z2 889 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 FBXO38Q6PIJ6 1188 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 NLRP9Q7RTR0 991 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 TMEM135Q86UB9 458 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 ZBED8Q8IZ13 594 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 NDUFAF2Q8N183 169 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 MPP5Q8N3R9 675 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 FBXO36Q8NEA4 188 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 LPCAT1Q8NF37 534 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 RPLP0P6Q8NHW5 317 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PIP4K2CQ8TBX8 421 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 GRIN3AQ8TCU5 1115 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PYROXD1Q8WU10 500 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PDCD6IPQ8WUM4 868 aaKnown RBP14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PEX13Q92968 403 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 RMDN1Q96DB5 314 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 STAMBPL1Q96FJ0 436 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 SCRN2Q96FV2 425 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 TTC25Q96NG3 672 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 C19orf43Q9BQ61 176 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 HDAC8Q9BY41 377 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 SEMA4AQ9H3S1 761 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 TRABDQ9H4I3 376 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 LMAN1LQ9HAT1 526 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 ARFGAP3Q9NP61 516 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 PIH1D1Q9NWS0 290 aaKnown RBP14.33□□□□□ -0.12
SF3B1-204ENST00000414963 SYBUQ9NX95 663 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 RIMKLBQ9ULI2 386 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 MMP17Q9ULZ9 603 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 SOX13Q9UN79 622 aa14.33□□□□□ -0.12
SF3B1-204ENST00000414963 FAM237BA0A1B0GVD1 139 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 HEATR9A2RTY3 570 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 MROH6A6NGR9 719 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 FAM170BA6NMN3 283 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 C16orf96A6NNT2 1141 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 C1QTNF3-AMACRE9PGA6 284 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 RNASEH1O60930 286 aaKnown RBP14.32□□□□□ -0.12
SF3B1-204ENST00000414963 ATG13O75143 517 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 BANF1O75531 89 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 PAPSS2O95340 614 aaPredicted RBP14.32□□□□□ -0.12
SF3B1-204ENST00000414963 ADH1BP00325 375 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 HOXB2P14652 356 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 SLC8A1P32418 973 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 COPAP53621 1224 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 EPHB1P54762 984 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 MTM1Q13496 603 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 FRG1Q14331 258 aaKnown RBP14.32□□□□□ -0.12
SF3B1-204ENST00000414963 CDKN3Q16667 212 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 UGP2Q16851 508 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 CFAP58Q5T655 872 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 STEAP4Q687X5 459 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 KIAA1211LQ6NV74 962 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 CYS1Q717R9 158 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 CLDN23Q96B33 292 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 PPP1R16AQ96I34 528 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 FUT8Q9BYC5 575 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 PABPC3Q9H361 631 aaKnown RBP14.32□□□□□ -0.12
SF3B1-204ENST00000414963 CDC42EP4Q9H3Q1 356 aaKnown RBP14.32□□□□□ -0.12
SF3B1-204ENST00000414963 TBC1D17Q9HA65 648 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 PLAC1Q9HBJ0 212 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 NINJ2Q9NZG7 142 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 SAMD15Q9P1V8 674 aa14.32□□□□□ -0.12
SF3B1-204ENST00000414963 ZC3H7BQ9UGR2 993 aaKnown RBP14.32□□□□□ -0.12
SF3B1-204ENST00000414963 MTF2Q9Y483 593 aaPredicted RBP14.32□□□□□ -0.12
SF3B1-204ENST00000414963 TCAF1Q9Y4C2 921 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms