RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 TRIM23P36406 574 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 RPIAP49247 311 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 PFN3P60673 137 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SIM1P81133 766 aaPredicted RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 BNC1Q01954 994 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 DPTQ07507 201 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 PPIDQ08752 370 aaKnown RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 SLC10A7Q0GE19 358 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 KIF5AQ12840 1032 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 MTM1Q13496 603 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 LRRC14Q15048 493 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 TAZQ16635 292 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SMTNL2Q2TAL5 461 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 ARMC12Q5T9G4 340 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SLC9A4Q6AI14 798 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 CCDC70Q6NSX1 233 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 Q6ZSR6 202 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 DPPA4Q7L190 304 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 PARGQ86W56 976 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 TMPRSS12Q86WS5 348 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 CACUL1Q86Y37 369 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 KATNAL2Q8IYT4 538 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 NRSN1Q8IZ57 195 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 FSTL5Q8N475 847 aaPredicted RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 PAF1Q8N7H5 531 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 TTC13Q8NBP0 860 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 PCDH19Q8TAB3 1148 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 DTX3LQ8TDB6 740 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 P3H4Q92791 437 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 LRRC45Q96CN5 670 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 HAUS1Q96CS2 278 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 CELF6Q96J87 481 aaKnown RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 SLC6A18Q96N87 628 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 LYSMD1Q96S90 227 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 KLF6Q99612 283 aaPredicted RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 IL12RB2Q99665 862 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 BAG1Q99933 345 aaPredicted RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 ADGRE3Q9BY15 652 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 RBSNQ9H1K0 784 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SCUBE2Q9NQ36 999 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 GPATCH2LQ9NWQ4 482 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 NLGN3Q9NZ94 848 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 SPASTQ9UBP0 616 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 TRHDEQ9UKU6 1024 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 ZFR2Q9UPR6 939 aaKnown RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 ATP8A1Q9Y2Q0 1164 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 MSRB2Q9Y3D2 182 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 PCDHA3Q9Y5H8 950 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 WDR87Q6ZQQ6 2873 aa6.44□□□□□ -1.38
USP54-202ENST00000413442 ATXN2Q99700 1313 aaKnown RBP6.44□□□□□ -1.38
USP54-202ENST00000413442 MYO15AQ9UKN7 3530 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 DOCK9Q9BZ29 2069 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 SPTBN4Q9H254 2564 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 GPR179Q6PRD1 2367 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 LRRD1A4D1F6 860 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 IGLON5A6NGN9 336 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 TMX2-CTNND1H3BSU7 103 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 SCAMP1O15126 338 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 LZTS3O60299 673 aaPredicted RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 FZD6O60353 706 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 BUB1BO60566 1050 aaPredicted RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 PPFIA2O75334 1257 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 WNT1P04628 370 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 ALPIP09923 528 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 NME1P15531 152 aaKnown RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 TSHRP16473 764 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 COMTP21964 271 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 ACP1P24666 158 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 EPHA8P29322 1005 aaPredicted RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 MAT2AP31153 395 aaKnown RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 PTPN7P35236 360 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 MMP12P39900 470 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 TNNT3P45378 269 aaPredicted RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 LIG3P49916 1009 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 VAV2P52735 878 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 PPP2CBP62714 309 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 PPP2CAP67775 309 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 IFI35P80217 286 aaPredicted RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 ARHGEF7Q14155 803 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 ELOCQ15369 112 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 PPP2R5EQ16537 467 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 ATXN7L2Q5T6C5 722 aaPredicted RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 ZDHHC20Q5W0Z9 365 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 NCBP2-AS2Q69YL0 99 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 ZCCHC8Q6NZY4 707 aaKnown RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 LIPIQ6XZB0 460 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 MACC1Q6ZN28 852 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 ZNF662Q6ZS27 426 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 USP45Q70EL2 814 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 ZNF765Q7L2R6 523 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 RAB44Q7Z6P3 723 aaPredicted RBP6.43□□□□□ -1.38
USP54-202ENST00000413442 DAAM2Q86T65 1068 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 CCDC13Q8IYE1 715 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 NPWQ8N729 165 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 PLD5Q8N7P1 536 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 CCNYQ8ND76 341 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 CCDC112Q8NEF3 446 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 DEFB124Q8NES8 71 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 OR4C6Q8NH72 309 aa6.43□□□□□ -1.38
USP54-202ENST00000413442 CCHCR1Q8TD31 782 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms