RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 HCN4Q9Y3Q4 1203 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 NEU2Q9Y3R4 380 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 MRFAP1Q9Y605 127 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 SPAG17Q6Q759 2223 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 CACNA1HO95180 2353 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 C10orf142B7Z368 130 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 PRKCGP05129 697 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 ITIH2P19823 946 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 TUBB2AQ13885 445 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 KCTD19Q17RG1 926 aaPredicted RBP29.52■■■□□ 2.32
USP42-202ENST00000404008 WHAMMP3Q1A5X7 153 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 FAXCQ5TGI0 409 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 KDELC2Q7Z4H8 507 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 KLHL7Q8IXQ5 586 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 ABCA7Q8IZY2 2146 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 TAB3Q8N5C8 712 aaPredicted RBP29.52■■■□□ 2.32
USP42-202ENST00000404008 IPMKQ8NFU5 416 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 SLCO2A1Q92959 643 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 TUBB2BQ9BVA1 445 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 C6orf106Q9H6K1 298 aaPredicted RBP29.52■■■□□ 2.32
USP42-202ENST00000404008 GGT7Q9UJ14 662 aa29.52■■■□□ 2.32
USP42-202ENST00000404008 TNRC6BQ9UPQ9 1833 aaKnown RBP29.51■■■□□ 2.32
USP42-202ENST00000404008 MUC6Q6W4X9 2439 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 LRRK1Q38SD2 2015 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 LOC285095A0A1B0GVY8 99 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 FAM47DPA6NHR8 397 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 RIOK3O14730 519 aaKnown RBP29.51■■■□□ 2.31
USP42-202ENST00000404008 MMP12P39900 470 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 GRIA4P48058 902 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 CKAP4Q07065 602 aaKnown RBP29.51■■■□□ 2.31
USP42-202ENST00000404008 ELP6Q0PNE2 266 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 GALNT3Q14435 633 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 ERAP2Q6P179 960 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 CEP68Q76N32 757 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 LPCAT1Q8NF37 534 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 CADM4Q8NFZ8 388 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 ZC3H10Q96K80 434 aaKnown RBP29.51■■■□□ 2.31
USP42-202ENST00000404008 RUNDC3BQ96NL0 473 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 PCED1AQ9H1Q7 454 aa29.51■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3DA0A087WVF3 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3IA0A087WXS9 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3EA0A087X179 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3KA0A087X1G2 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 GOLGA6CA6NDK9 693 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 GOLGA6BA6NDN3 693 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3FA6NER0 549 aaPredicted RBP29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3LB9A6J9 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 ECEL1O95672 775 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 GAS8O95995 478 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 EPOP01588 193 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 KRT14P02533 472 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3HP0C7X1 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 GOLGA6DP0CG33 693 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 FDFT1P37268 417 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 EPHB1P54762 984 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 SIM2Q14190 667 aaPredicted RBP29.5■■■□□ 2.31
USP42-202ENST00000404008 KCTD11Q693B1 232 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3GQ6DHY5 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3CQ6IPX1 549 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 NEK5Q6P3R8 708 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 TBC1D3Q8IZP1 549 aaPredicted RBP29.5■■■□□ 2.31
USP42-202ENST00000404008 SCRN2Q96FV2 425 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 MCCC1Q96RQ3 725 aaPredicted RBP29.5■■■□□ 2.31
USP42-202ENST00000404008 FSD1LQ9BXM9 530 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 DUSP15Q9H1R2 295 aaPredicted RBP29.5■■■□□ 2.31
USP42-202ENST00000404008 ETNK1Q9HBU6 452 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 RAB6BQ9NRW1 208 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 GOLGA6AQ9NYA3 693 aa29.5■■■□□ 2.31
USP42-202ENST00000404008 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 A0A0J9YYE9 177 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 PRR23AA6NEV1 266 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 ANKRD66B4E2M5 251 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 NEMP1O14524 444 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 TSPAN6O43657 245 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 NDST3O95803 873 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 TRBC1P01850 177 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 ADRA1AP35348 466 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 TRIP13Q15645 432 aaPredicted RBP29.49■■■□□ 2.31
USP42-202ENST00000404008 PLK5Q496M5 336 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 SPDYCQ5MJ68 293 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 PMS2CLQ68D20 193 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 LPCAT2Q7L5N7 544 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 TMEFF1Q8IYR6 380 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 NDUFAF2Q8N183 169 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 ATOH1Q92858 354 aaPredicted RBP29.49■■■□□ 2.31
USP42-202ENST00000404008 EPC1Q9H2F5 836 aa29.49■■■□□ 2.31
USP42-202ENST00000404008 FRYLO94915 3013 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 PCDH8O95206 1070 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 ATXN1LP0C7T5 689 aaKnown RBP29.48■■■□□ 2.31
USP42-202ENST00000404008 CTPS1P17812 591 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 NFKBIAP25963 317 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 PTGIRP43119 386 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 FAM193AP78312 1265 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 SEMG2Q02383 582 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 SEMA5AQ13591 1074 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 QPCTQ16769 361 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 TMEM52BQ4KMG9 183 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 USP45Q70EL2 814 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 DPPA4Q7L190 304 aa29.48■■■□□ 2.31
USP42-202ENST00000404008 DEFB119Q8N690 84 aa29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms