RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 TRA2AQ13595 282 aaKnown RBP eCLIP4.22□□□□□ -1.733e-6■■■■□ 20.9
HMGB1-204ENST00000399489 TP53BP2Q13625 1128 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF273Q14593 569 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 MGAT5BQ3V5L5 792 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 RABL6Q3YEC7 729 aaPredicted RBP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 BOLA3Q53S33 107 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF667Q5HYK9 610 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF569Q5MCW4 686 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ETFRF1Q6IPR1 90 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 FBXO42Q6P3S6 717 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 TMEM270Q6UE05 265 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SERPINA13PQ6UXR4 307 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 GBP6Q6ZN66 633 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SYT12Q8IV01 421 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 FBXW8Q8N3Y1 598 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 KDM1BQ8NB78 822 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 MNS1Q8NEH6 495 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 TMIEQ8NEW7 156 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 CADM4Q8NFZ8 388 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 BPIFB1Q8TDL5 484 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 RNF139Q8WU17 664 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SMARCE1Q969G3 411 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ERO1AQ96HE7 468 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 ZNF668Q96K58 619 aaPredicted RBP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 RUFY1Q96T51 708 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SRSF8Q9BRL6 282 aaKnown RBP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 DUSP26Q9BV47 211 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 CLPBQ9H078 707 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SIK2Q9H0K1 926 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 YY1AP1Q9H869 796 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 FBRSL1Q9HCM7 1045 aaKnown RBP4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SLC35D1Q9NTN3 355 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 DKK2Q9UBU2 259 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 SUN2Q9UH99 717 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 AMACRQ9UHK6 382 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 TSPYL4Q9UJ04 414 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 TLK1Q9UKI8 766 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 MAP3K2Q9Y2U5 619 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 NCAPD3P42695 1498 aa4.22□□□□□ -1.73
HMGB1-204ENST00000399489 CTAGE9A4FU28 777 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 E9PLN8 166 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 VWA5AO00534 786 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 DDHD2O94830 711 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ALPPP05187 535 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 TPBGLP0DKB5 382 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ALPPL2P10696 532 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 GHRP10912 638 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 NEFHP12036 1026 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ZFXP17010 805 aaPredicted RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 HTR7P34969 479 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CCR3P51677 355 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CHN2P52757 468 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CAPZA1P52907 286 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 TIRAPP58753 221 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ASIC1P78348 528 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 BEX3Q00994 111 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 NIPAL4Q0D2K0 466 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CSTF3Q12996 717 aaKnown RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 GRAPQ13588 217 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 PROSER3Q2NL68 480 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 LETM2Q2VYF4 491 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 FAM102AQ5T9C2 384 aaPredicted RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 JADE1Q6IE81 842 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 SLC25A24Q6NUK1 477 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 FOXR2Q6PJQ5 311 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CLEC17AQ6ZS10 378 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 RRM2BQ7LG56 351 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 SPATA19Q7Z5L4 167 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 FAM160B2Q86V87 743 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ANKRD49Q8WVL7 239 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 PRCCQ92733 491 aaPredicted RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ARRDC3Q96B67 414 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 REXO5Q96IC2 774 aaKnown RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CLMNQ96JQ2 1002 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 LINC00615Q96LM1 132 aaPredicted RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 NEK1Q96PY6 1258 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 GSDMAQ96QA5 445 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 PAFAH2Q99487 392 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 VKORC1Q9BQB6 163 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 FERMT1Q9BQL6 677 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 HEMGNQ9BXL5 484 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 NYXQ9GZU5 481 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CTDSP1Q9GZU7 261 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ISCUQ9H1K1 167 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 EPHX3Q9H6B9 360 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 POLE3Q9NRF9 147 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 IARS2Q9NSE4 1012 aaKnown RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 RRP7BPQ9NSQ0 103 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 TMEM51Q9NW97 253 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 HSPB7Q9UBY9 170 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 ARMCX3Q9UH62 379 aaPredicted RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 LEF1Q9UJU2 399 aaPredicted RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 PRDM4Q9UKN5 801 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 INTS6Q9UL03 887 aaKnown RBP4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CDH7Q9ULB5 785 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CHKBQ9Y259 395 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 PCDHA10Q9Y5I2 948 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 LIPGQ9Y5X9 500 aa4.21□□□□□ -1.73
HMGB1-204ENST00000399489 CLCA3PQ9Y6N3 262 aa4.21□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms