RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CADM1Q9BY67 442 aaKnown RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 SNX6Q9UNH7 406 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 OAS3Q9Y6K5 1087 aaKnown RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 NLRP1Q9C000 1473 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 SHROOM2Q13796 1616 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 FOXO6A8MYZ6 492 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 FAM47E-STBD1D6RA91 191 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 E2F2Q14209 437 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 GALNT3Q14435 633 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 AP5B1Q2VPB7 878 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 DAW1Q8N136 415 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 HSPBAP1Q96EW2 488 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 ABCG8Q9H221 673 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 ACP6Q9NPH0 428 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 SCAF8Q9UPN6 1271 aaKnown RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 PEX16Q9Y5Y5 336 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 NCANO14594 1321 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 EPHB6O15197 1021 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A9O60656 530 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MT-ND1P03886 318 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A6P19224 532 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A1P22309 533 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A4P22310 534 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A3P35503 534 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A5P35504 534 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 SMIM11AP58511 58 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MXD1Q05195 221 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 BIKQ13323 160 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 CRY1Q16526 586 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MIIPQ5JXC2 388 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 RDH11Q8TC12 318 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 OR52E6Q96RD3 313 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 CHIAQ9BZP6 476 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A7Q9HAW7 530 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A10Q9HAW8 530 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 UGT1A8Q9HAW9 530 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MID1O15344 667 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 ORC5O43913 435 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 RAMP2O60895 175 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 BMP10O95393 424 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 PGRP06401 933 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 TNNI3P19429 210 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 RPS9P46781 194 aaKnown RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 HDAC2Q92769 488 aaKnown RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 RHOBTB2Q9BYZ6 727 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 TNKS2Q9H2K2 1166 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 XPR1Q9UBH6 696 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MBD5Q9P267 1494 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 ZBTB14O43829 449 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 OR56A5P0C7T3 313 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 PRKAR2AP13861 404 aaKnown RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MPSTP25325 297 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 CLCN3P51790 818 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MFSD14CQ5VZR4 134 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 XRRA1Q6P2D8 792 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 ERI1Q8IV48 349 aaKnown RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 EPS8L1Q8TE68 723 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 PRDM8Q9NQV8 689 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 PDP1Q9P0J1 537 aaPredicted RBP11.9□□□□□ -0.5
SYNPO-202ENST00000394243 MAGI3Q5TCQ9 1506 aa11.9□□□□□ -0.5
SYNPO-202ENST00000394243 CRB1P82279 1406 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 WWP2O00308 870 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 SLC22A3O75751 556 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 PDHA2P29803 388 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 OR1E1P30953 314 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 CCR4P51679 360 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 GNA13Q14344 377 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 GLYATQ6IB77 296 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 SH3RF1Q7Z6J0 888 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 ZDHHC17Q8IUH5 632 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 GPR65Q8IYL9 337 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 INPP4AQ96PE3 977 aaPredicted RBP11.9□□□□□ -0.51
SYNPO-202ENST00000394243 LRRC4CQ9HCJ2 640 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 CORO2BQ9UQ03 480 aa11.9□□□□□ -0.51
SYNPO-202ENST00000394243 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.9□□□□□ -0.51
SYNPO-202ENST00000394243 SUV39H1O43463 412 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CPNE3O75131 537 aaKnown RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 GABBR2O75899 941 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 BMP7P18075 431 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 DNAJB2P25686 324 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PEX6Q13608 980 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 TNFAIP8L1Q8WVP5 186 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PANX1Q96RD7 426 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 EBNA1BP2Q99848 306 aaKnown RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CCSER2Q9H7U1 834 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 ELL3Q9HB65 397 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 ENTPD4Q9Y227 616 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PLLPQ9Y342 182 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CNTNAP2Q9UHC6 1331 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 OR6C70A6NIJ9 312 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 I3L521 148 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 ALOX15BO15296 676 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 RFX5P48382 616 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PAN2Q504Q3 1202 aaKnown RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 GPAT3Q53EU6 434 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 CXorf57Q6NSI4 855 aaKnown RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 RALGPS2Q86X27 583 aaPredicted RBP11.89□□□□□ -0.51
SYNPO-202ENST00000394243 PHC2Q8IXK0 858 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 TMCO6Q96DC7 493 aa11.89□□□□□ -0.51
SYNPO-202ENST00000394243 GRIP1Q9Y3R0 1128 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms