RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SALL1Q9NSC2 1324 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 FFAR3O14843 346 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 GPR42O15529 346 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 USP12O75317 370 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 RBMXL2O75526 392 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ITGAVP06756 1048 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 OGNP20774 298 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 RFX4Q33E94 735 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 FBXW8Q8N3Y1 598 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 MTMR8Q96EF0 704 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CORO1BQ9BR76 489 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 MARK1Q9P0L2 795 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 RSL24D1Q9UHA3 163 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CACNB4O00305 520 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 IGFBP4P22692 258 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CYP4F2P78329 520 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 MRPS6P82932 125 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CYP4F3Q08477 520 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ZDHHC20Q5W0Z9 365 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 RNF43Q68DV7 783 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PTCHD4Q6ZW05 846 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 GPR156Q8NFN8 814 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 DNAJB14Q8TBM8 379 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ZHX1-C8orf76Q96EF9 292 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PORCNQ9H237 461 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PSMD13Q9UNM6 376 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ISM1B1AKI9 464 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PGRMC2O15173 223 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PEX11AO75192 247 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 TCEA3O75764 348 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ATP6V0D1P61421 351 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 TMEM63BQ5T3F8 832 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 EIF1ADQ8N9N8 165 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 AENQ8WTP8 325 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 KBTBD7Q8WVZ9 684 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 RAD51AP1Q96B01 352 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 TSPAN18Q96SJ8 248 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 IL1BP01584 269 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 GIMD1P0DJR0 217 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ADRA1DP25100 572 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 AP1S2P56377 157 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PSME3P61289 254 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 SEC23AQ15436 765 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 INTS5Q6P9B9 1019 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 DEF8Q6ZN54 512 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 JAZF1Q86VZ6 243 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 CCDC36Q8IYA8 594 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ALLCQ8N6M5 410 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 OR10H5Q8NGA6 315 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 OR8D1Q8WZ84 308 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PNMA5Q96PV4 448 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 PANX1Q96RD7 426 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 GPN1Q9HCN4 374 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 BPIFA1Q9NP55 256 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 EXD2Q9NVH0 621 aa12.85□□□□□ -0.35
CCDC88C-204ENST00000389857 ERBB2P04626 1255 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 CLUP10909 449 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 HDCP19113 662 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 RAB25P57735 213 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 MRPS23Q9Y3D9 190 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 SAMHD1Q9Y3Z3 626 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 FAM205AQ6ZU69 1335 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 G3V2T6 193 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 AHCYL1O43865 530 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 SERPINA1P01009 418 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 TNFRSF8P28908 595 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 RPS6KA3P51812 740 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 MBTD1Q05BQ5 628 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ABRQ12979 859 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 MPPE1Q53F39 396 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 CHSY3Q70JA7 882 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 POC5Q8NA72 575 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 MTFR1LQ9H019 292 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 DDTLA6NHG4 134 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 SUV39H1O43463 412 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 UGT2B17O75795 530 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ADH1CP00326 375 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 VEGFAP15692 232 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 SULT2A1Q06520 285 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 MAMLD1Q13495 774 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 CBX2Q14781 532 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 UNC5AQ6ZN44 842 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 CERKQ8TCT0 537 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 OSBPL11Q9BXB4 747 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 RFXANKO14593 260 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 LGALS2P05162 132 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 TFEBP19484 476 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 LPOP22079 712 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ZIK1Q3SY52 487 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 KCTD21Q4G0X4 260 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ZC3H12AQ5D1E8 599 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 WSCD1Q658N2 575 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 DENND5AQ6IQ26 1287 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 TTC7BQ86TV6 843 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 ZNF398Q8TD17 642 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 CKAP2Q8WWK9 683 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 NR2E3Q9Y5X4 410 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 PPATQ06203 517 aa12.84□□□□□ -0.35
CCDC88C-204ENST00000389857 HKDC1Q2TB90 917 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms