RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 HGSO14964 777 aaPredicted RBP25.33■■□□□ 1.65
SHOX2-201ENST00000389589 SNAP91O60641 907 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 RPP40O75818 363 aaKnown RBP25.33■■□□□ 1.65
SHOX2-201ENST00000389589 ARSDP51689 593 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 MPPE1Q53F39 396 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 PLPP4Q5VZY2 271 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 PTAR1Q7Z6K3 402 aaPredicted RBP25.33■■□□□ 1.65
SHOX2-201ENST00000389589 ARID3BQ8IVW6 561 aaPredicted RBP25.33■■□□□ 1.65
SHOX2-201ENST00000389589 MFN1Q8IWA4 741 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 MFSD6LQ8IWD5 586 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 DDI1Q8WTU0 396 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 KCTD3Q9Y597 815 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 ARL5AQ9Y689 179 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 G3V2L1 256 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 CSKP41240 450 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 NCALDP61601 193 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 TSNAXIP1Q2TAA8 658 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 CNSTQ6PJW8 725 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 TNS4Q8IZW8 715 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 GPR150Q8NGU9 434 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 RMDN1Q96DB5 314 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 ALG14Q96F25 216 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 TSPAN17Q96FV3 270 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 ADGRE3Q9BY15 652 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 C20orf27Q9GZN8 174 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 ZFP69BQ9UJL9 534 aa25.33■■□□□ 1.65
SHOX2-201ENST00000389589 CFAP73A6NFT4 308 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 CCL16O15467 120 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 MYL2P10916 166 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 AVPR1AP37288 418 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 KPNA2P52292 529 aaKnown RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 TAS2R39P59534 338 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 LINGO4Q6UY18 593 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 CEP97Q8IW35 865 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 OR6Y1Q8NGX8 325 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 PPP4R1Q8TF05 950 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 DNAJC1Q96KC8 554 aaKnown RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 NSMCE3Q96MG7 304 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 OMDQ99983 421 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 C2orf49Q9BVC5 232 aaPredicted RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 DNMT3BQ9UBC3 853 aaKnown RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 HEY2Q9UBP5 337 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 VPS51Q9UID3 782 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 RUVBL2Q9Y230 463 aaKnown RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 RAI2Q9Y5P3 530 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 MKI67P46013 3256 aaKnown RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 LCHNA4D1U4 455 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 HIDE1A8MVS5 230 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 DNAJC6O75061 913 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 GLP2RO95838 553 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 CLCN4P51793 760 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 PRKAA2P54646 552 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 UBE3AQ05086 875 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 MRNIPQ6NTE8 343 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 MTDHQ86UE4 582 aaKnown RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 SLC22A17Q8WUG5 538 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 TBATAQ96M53 351 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 ZNF395Q9H8N7 513 aaPredicted RBP25.32■■□□□ 1.64
SHOX2-201ENST00000389589 TLR9Q9NR96 1032 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 LHX3Q9UBR4 397 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 ARHGAP26Q9UNA1 814 aa25.32■■□□□ 1.64
SHOX2-201ENST00000389589 LEFTY2O00292 366 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 KLHL2O95198 593 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 DDX6P26196 483 aaKnown RBP eCLIP25.31■■□□□ 1.64
SHOX2-201ENST00000389589 TAF1AQ15573 450 aaPredicted RBP25.31■■□□□ 1.64
SHOX2-201ENST00000389589 NCEH1Q6PIU2 408 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 WDR75Q8IWA0 830 aaKnown RBP25.31■■□□□ 1.64
SHOX2-201ENST00000389589 BBS7Q8IWZ6 715 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 CENPLQ8N0S6 344 aaPredicted RBP25.31■■□□□ 1.64
SHOX2-201ENST00000389589 TTC16Q8NEE8 873 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 SPPL3Q8TCT6 385 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 KCTD4Q8WVF5 259 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 POF1BQ8WVV4 589 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 SLC46A2Q9BY10 475 aa25.31■■□□□ 1.64
SHOX2-201ENST00000389589 TRIM13O60858 407 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 UNC5CO95185 931 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 S1PR4O95977 384 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 PRLP01236 227 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 ATP5BP06576 529 aaKnown RBP25.3■■□□□ 1.64
SHOX2-201ENST00000389589 ABCE1P61221 599 aaKnown RBP25.3■■□□□ 1.64
SHOX2-201ENST00000389589 RHOAP61586 193 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 ITGA9Q13797 1035 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 RETSATQ6NUM9 610 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 RNF135Q8IUD6 432 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 PIWIL2Q8TC59 973 aaKnown RBP25.3■■□□□ 1.64
SHOX2-201ENST00000389589 WFDC5Q8TCV5 224 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 ACDQ96AP0 544 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 WWP1Q9H0M0 922 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 NLE1Q9NVX2 485 aaPredicted RBP25.3■■□□□ 1.64
SHOX2-201ENST00000389589 CORO1CQ9ULV4 474 aaPredicted RBP25.3■■□□□ 1.64
SHOX2-201ENST00000389589 DOCK6Q96HP0 2047 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 TMEM114B3SHH9 223 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 AURKAO14965 403 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 GOT2P00505 430 aaKnown RBP25.3■■□□□ 1.64
SHOX2-201ENST00000389589 GJA1P17302 382 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 EN2P19622 333 aaPredicted RBP25.3■■□□□ 1.64
SHOX2-201ENST00000389589 EPHA5P54756 1037 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 ZBTB16Q05516 673 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 ZYG11AQ6WRX3 759 aa25.3■■□□□ 1.64
SHOX2-201ENST00000389589 SKA1Q96BD8 255 aa25.3■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms